Inference of gene regulatory networks based on a universal minimum description length (Q35209004)

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6 January 2020

title

Inference of gene regulatory networks based on a universal minimum description length (English)

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6 January 2020

2

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6 January 2020

author name string

John Dougherty

series ordinal

1

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6 January 2020

Jaakko Astola

series ordinal

3

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6 January 2020

publication date

1 January 2008

1 reference

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Eurasip Journal on Bioinformatics and Systems Biology

6 January 2020

published in

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6 January 2020

page(s)

482090

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https://scigraph.springernature.com/pub.10.1155/2008/482090

6 January 2020

exact match

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cites work

Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Inferring gene regulatory networks from time series data using the minimum description length principle

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Transcriptional control in the segmentation gene network of Drosophila

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

The transcription factor Schnurri plays a dual role in mediating Dpp signaling during embryogenesis.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Using Bayesian networks to analyze expression data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Identification of genetic networks from a small number of gene expression patterns under the Boolean network model.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Dynamic changes in the functions of Odd-skipped during early Drosophila embryogenesis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Genomic regulation modeled as a network with basins of attraction.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Reveal, a general reverse engineering algorithm for inference of genetic network architectures.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Regulation of the twist target gene tinman by modular cis-regulatory elements during early mesoderm development

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

decapentaplegic overexpression affects Drosophila wing and leg imaginal disc development and wingless expression.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Drosophila midgut morphogenesis requires the function of the segmentation gene odd-paired

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Role of the teashirt gene in Drosophila midgut morphogenesis: secreted proteins mediate the action of homeotic genes.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Metabolic stability and epigenesis in randomly constructed genetic nets

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Modeling by shortest data description

13 July 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

Generating Boolean networks with a prescribed attractor structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

Activities and sensitivities in boolean network models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

Random Networks of Automata: A Simple Annealed Approximation

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

Gene expression during the life cycle of Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

Dpp and Notch specify the fusion cell fate in the dorsal branches of the Drosophila trachea

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

A Notch/Delta-dependent relay mechanism establishes anterior-posterior polarity in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

Requirement of teashirt (tsh) function during cell fate specification in developing head structures in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

Inferring subnetworks from perturbed expression profiles

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

High bicoid levels render the terminal system dispensable for Drosophila head development.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Early even-skipped stripes act as morphogenetic gradients at the single cell level to establish engrailed expression.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

Invagination centers within the Drosophila stomatogastric nervous system anlage are positioned by Notch-mediated signaling which is spatially controlled through wingless.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171396

On Learning Gene Regulatory Networks Under the Boolean Network Model

26 September 2018

1 reference

https://api.crossref.org/works/10.1155%2F2008%2F482090

A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18437238

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1155/2008/482090

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18437238%20AND%20SRC:MED&resulttype=core&format=json

journals/ejbsb/DoughertyTA08

6 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18437238%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

1 reference