AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. (Q35213595)

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2 February 2020

title

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome (English)

1 reference

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2 February 2020

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4

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2 February 2020

Claude Rispe

5

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2 February 2020

Olivier Collin

6

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2 February 2020

Terence D. Murphy

9

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2 February 2020

Denis Tagu

10

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2 February 2020

author name string

F Legeai

1

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2 February 2020

S Shigenobu

2

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2 February 2020

J-P Gauthier

3

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2 February 2020

S Richards

7

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2 February 2020

A C C Wilson

8

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2 February 2020

publication date

1 March 2010

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2 February 2020

published in

Insect Molecular Biology

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2 February 2020

volume

19 Suppl 2

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2 February 2020

page(s)

5-12

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Genome sequence of the pea aphid Acyrthosiphon pisum

2 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372297

Identifying protein-coding genes in genomic sequences

13 July 2018

1 reference

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BioMart--biological queries made easy

13 July 2018

1 reference

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Annotating genomes with massive-scale RNA sequencing

13 July 2018

1 reference

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VectorBase: a data resource for invertebrate vector genomics

13 July 2018

1 reference

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Alternative isoform regulation in human tissue transcriptomes

13 July 2018

1 reference

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NCBI Reference Sequences: current status, policy and new initiatives

13 July 2018

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big data: The future of biocuration

13 July 2018

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Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges

13 July 2018

1 reference

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Calling on a million minds for community annotation in WikiProteins

13 July 2018

1 reference

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FlyBase: integration and improvements to query tools

13 July 2018

1 reference

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Steady progress and recent breakthroughs in the accuracy of automated genome annotation

13 July 2018

1 reference

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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

13 July 2018

1 reference

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The vertebrate genome annotation (Vega) database

13 July 2018

1 reference

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13 July 2018

1 reference

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PhylomeDB: a database for genome-wide collections of gene phylogenies

13 July 2018

1 reference

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A Chado case study: an ontology-based modular schema for representing genome-associated biological information

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372297

Genome re-annotation: a wiki solution?

13 July 2018

1 reference

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Creating a honey bee consensus gene set

13 July 2018

1 reference

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EGASP: the human ENCODE Genome Annotation Assessment Project

13 July 2018

1 reference

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SynView: a GBrowse-compatible approach to visualizing comparative genome data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372297

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372297

Combined evidence annotation of transposable elements in genome sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372297

Repbase Update, a database of eukaryotic repetitive elements

13 July 2018

1 reference

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372297

FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences

13 July 2018

1 reference

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Apollo: a sequence annotation editor

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372297

The generic genome browser: a building block for a model organism system database

13 July 2018

1 reference

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Genome annotation: from sequence to biology

13 July 2018

1 reference

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13 July 2018

1 reference

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A computer program for aligning a cDNA sequence with a genomic DNA sequence

13 July 2018

1 reference

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Prediction of complete gene structures in human genomic DNA

13 July 2018

1 reference

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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372297

AphidBase: a database for aphid genomic resources.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4372297

Community annotation: procedures, protocols, and supporting tools.

26 September 2018

1 reference

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10.1111/J.1365-2583.2009.00930.X

26 September 2018

Identifiers

DOI

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2 February 2020

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2 February 2020

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