The computational analysis of scientific literature to define and recognize gene expression clusters (Q35222434)

7 August 2017

title

The computational analysis of scientific literature to define and recognize gene expression clusters (English)

1 reference

7 August 2017

main subject

scientific literature

1 reference

4

Russ B Altman

1 reference

7 August 2017

Soumya Raychaudhuri

1

1 reference

7 August 2017

Jeffrey T Chang

series ordinal

2

1 reference

7 August 2017

Farhad Imam

series ordinal

3

1 reference

7 August 2017

language of work or name

English

0 references

publication date

1 August 2003

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7 August 2017

published in

Nucleic Acids Research

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7 August 2017

volume

31

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7 August 2017

issue

15

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7 August 2017

page(s)

4553-4560

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A literature-based method for assessing the functional coherence of a gene group

7 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Mining microarray expression data by literature profiling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Using text analysis to identify functionally coherent gene groups

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Genomics and natural language processing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

A literature network of human genes for high-throughput analysis of gene expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Textquest: document clustering of Medline abstracts for concept discovery in molecular biology.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Molecular classification of cutaneous malignant melanoma by gene expression profiling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Gene ontology: tool for the unification of biology

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Analysis of large-scale gene expression data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Cluster analysis and display of genome-wide expression patterns

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

EUCLID: automatic classification of proteins in functional classes by their database annotations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

SGD: Saccharomyces Genome Database

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

FlyBase: a Drosophila database. The FlyBase consortium

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Gene expression during the life cycle of Drosophila melanogaster.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Statistical estimation of cluster boundaries in gene expression profile data

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Dnop56, a Drosophila gene homologous to the yeast nucleolar NOP56 gene

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Whole-genome expression analysis: challenges beyond clustering

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Genome-wide study of aging and oxidative stress response in Drosophila melanogaster

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Genes, themes and microarrays: using information retrieval for large-scale gene analysis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Functional discovery via a compendium of expression profiles

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

Restricted expression and subnuclear localization of the Drosophila gene Dnop5, a member of the Nop/Sik family of the conserved rRNA processing factors

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

The Nop60B gene of Drosophila encodes an essential nucleolar protein that functions in yeast

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169898

A novel method for automatic functional annotation of proteins

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12888516

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Automatic annotation for biological sequences by extraction of keywords from MEDLINE abstracts. Development of a prototype system

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12888516

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG636

1 reference

7 August 2017

1 reference

7 August 2017

1 reference