Prediction of protein deamidation rates from primary and three-dimensional structure (Q35248578)

7 August 2017

Prediction of protein deamidation rates from primary and three-dimensional structure (English)

1 reference

protein structure prediction

7 August 2017

0 references

protein structure

0 references

author name string

Robinson NE

series ordinal

1

1 reference

PubMed ID

11296285

7 August 2017

Robinson AB

series ordinal

2

1 reference

PubMed ID

11296285

7 August 2017

language of work or name

English

0 references

publication date

1 April 2001

1 reference

Proceedings of the National Academy of Sciences of the United States of America

7 August 2017

1 reference

7 August 2017

98

1 reference

7 August 2017

4367-4372

1 reference

7 August 2017

8

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

7 August 2017

1 reference

The structures of deoxy human haemoglobin and the mutant Hb Tyralpha42His at 120 K

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

The effects of alpha-helix on the stability of Asn residues: deamidation rates in peptides of varying helicity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

A potential allosteric subsite generated by domain swapping in bovine seminal ribonuclease

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Solution structure of reduced horse heart cytochrome c

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Refined crystal structures of native human angiogenin and two active site variants: implications for the unique functional properties of an enzyme involved in neovascularisation during tumour growth

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

A conserved deamidation site at Asn 2 in the catalytic subunit of mammalian cAMP-dependent protein kinase detected by capillary LC-MS and tandem mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Crystal structures of ribonuclease A complexes with 5'-diphosphoadenosine 3'-phosphate and 5'-diphosphoadenosine 2'-phosphate at 1.7 A resolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

The crystal structure of the liver fatty acid-binding protein. A complex with two bound oleates

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

X-ray crystal structure of human acidic fibroblast growth factor

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Phosphotransferase and substrate binding mechanism of the cAMP-dependent protein kinase catalytic subunit from porcine heart as deduced from the 2.0 A structure of the complex with Mn2+ adenylyl imidodiphosphate and inhibitor peptide PKI(5-24)

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Refined crystal structures of glucoamylase from Aspergillus awamori var. X100

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

The high-resolution structure of the histidine-containing phosphocarrier protein HPr from Escherichia coli determined by restrained molecular dynamics from nuclear magnetic resonance nuclear Overhauser effect data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Crystal structure of recombinant human triosephosphate isomerase at 2.8 A resolution. Triosephosphate isomerase-related human genetic disorders and comparison with the trypanosomal enzyme

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

The primary structure and properties of thioltransferase (glutaredoxin) from human red blood cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Structure of a protein in a kinetic trap

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Crystal structures of factor Xa specific inhibitors in complex with trypsin: structural grounds for inhibition of factor Xa and selectivity against thrombin

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Crystal structure of Ustilago sphaerogena ribonuclease U2 at 1.8 A resolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Kinetic study of the deamidation of growth hormone and prolactin.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Controlled deamidation of peptides and proteins: an experimental hazard and a possible biological timer

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Techniques of orthomolecular diagnosis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Primary sequence dependence of the deamidation of rabbit muscle aldolase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Evolution and the Distribution of Glutaminyl and Asparaginyl Residues in Proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Deamidation In Vivo of an Asparagine Residue of Rabbit Muscle Aldolase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Deamidation of glutaminyl and asparaginyl residues in peptides and proteins.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Selective deamidation and enzymatic methylation of seminal ribonuclease.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Comparison of the primary structures of ribonuclease U2 isoforms

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Deamidation of the asparaginyl-glycyl sequence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Evidence for isoaspartyl (deamidated) forms of mouse epidermal growth factor.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Tertiary Structure Is a Principal Determinant to Protein Deamidation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Formation of isoaspartate at two distinct sites during in vitro aging of human growth hormone.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Effect of protein conformation on rate of deamidation: ribonuclease A.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Identification of an isoaspartyl linkage formed upon deamidation of bovine calbindin D9k and structural characterization by 2D 1H NMR.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Analysis of human pictuitary growth hormone and its charge varriants by fast-atom bombardment mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

The structure of murine interleukin-1 β at 2.8 Å resolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Solution structure of murine epidermal growth factor determined by NMR spectroscopy and refined by energy minimization with restraints

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Proline cis-trans isomers in calbindin D9k observed by X-ray crystallography

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Structure of the EF corner favors deamidation of asparaginyl residues in hemoglobin: the example of Hb La Roche-sur-Yon [beta 81 (EF5) Leu----His]

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Deamidation at asparagine-88 in recombinant human interleukin 2

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Hemoglobin Wayne: a frameshift mutation detected in human hemoglobin alpha chains

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Synthesis and application of peptide immunogens related to the sperm tail protein tpx-1, a member of the CRISP superfamily of proteins

27 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Product binding and role of the C-terminal region in class I D-fructose 1,6-bisphosphate aldolase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Hemoglobin S/hemoglobin Osler: a case with 3 beta globin chains. DNA sequence (AAT) proves that Hb Osler is beta 145 Tyr-->Asn

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

The 2.0 A structure of human hypoxanthine-guanine phosphoribosyltransferase in complex with a transition-state analog inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Kinetic and structural analysis of mutant CD4 receptors that are defective in HIV gp120 binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

The NMR solution structure of human glutaredoxin in the fully reduced form

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Terminal marking of triosephosphate isomerase: consequences of deamidation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

A refined solution structure of hen lysozyme determined using residual dipolar coupling data

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Deamidation of HPr, a phosphocarrier protein of the phosphoenolpyruvate:sugar phosphotransferase system, involves asparagine 38 (HPr-1) and asparagine 12 (HPr-2) in isoaspartyl acid formation.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Repair of spontaneously deamidated HPr phosphocarrier protein catalyzed by the L-isoaspartate-(D-aspartate) O-methyltransferase

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

The Specific Nonenzymatic Cleavage of Bovine Ribonuclease with Hydroxylamine

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=31841

Effect of the three-dimensional structure on the deamidation reaction of ribonuclease A

26 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Rates of nonenzymic deamidation of glutaminyl and asparaginyl residues in pentapeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Deamidation of glutaminyl residues: dependence on pH, temperature, and ionic strength

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Sequence dependent deamidation rates for model peptides of cytochrome C

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Sequence dependent deamidation rates for model peptides of histone IV

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Importance of asparagine-61 and asparagine-109 to the angiogenic activity of human angiogenin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

Hemoglobin Redondo [beta 92(F8) His----Asn]: an unstable hemoglobin variant associated with heme loss which occurs in two forms

21 January 2018

1 reference

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Hemoglobin J Singapore: alpha 78 Asn--Asp; alpha 79 Ala--Gly

21 January 2018

1 reference

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Chemical stability of insulin. 1. Hydrolytic degradation during storage of pharmaceutical preparations

21 January 2018

1 reference

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Reduction of biological activity of murine recombinant interleukin-1 beta by selective deamidation at asparagine-149

21 January 2018

1 reference

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Three-dimensional structure of interleukin-2

21 January 2018

1 reference

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Structural and functional properties of hen egg-white lysozyme deamidated by protein engineering

21 January 2018

1 reference

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Molecular basis for the accumulation of acidic isozymes of triosephosphate isomerase on aging

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

In vitro deamidation of human triosephosphate isomerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.071066498

On the molecular origin of charge heterogeneity of rat liver fatty acid-binding protein (Z-protein)

21 January 2018

1 reference

12 December 2020

Deamidation of polyanion-stabilized acidic fibroblast growth factor

1 reference

12 December 2020

Posttranslational deamidation of proteins: the case of hemoglobin J Sardegna [alpha50(CD8)His-->Asn-->Asp]

1 reference

12 December 2020

Hemoglobin Providence. A human hemoglobin variant occurring in two forms in vivo

1 reference

12 December 2020

Human hypoxanthine-guanine phosphoribosyltransferase. Tryptic peptides and post-translational modification of the erythrocyte enzyme

1 reference

12 December 2020

Deamidation of soluble CD4 at asparagine-52 results in reduced binding capacity for the HIV-1 envelope glycoprotein gp120

1 reference

12 December 2020

On the heterogeneity of beef heart cytochrome c. 3. A kinetic study of the non-enzymic deamidation of the main subfractions (Cy I-Cy 3)

1 reference

12 December 2020

Multiple forms of cytochrome c in the rat. Precursor-product relationship between the main component Cy I and the minor components Cy II and Cy 3 in vivo

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.071066498

1 reference

7 August 2017

0 references

1 reference

7 August 2017

1 reference

PubMed ID

11296285