Repressive chromatin affects factor binding at yeast HO (homothallic switching) promoter (Q35266346)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21840992%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

title

Repressive chromatin affects factor binding at yeast HO (homothallic switching) promoter (English)

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10 February 2020

3

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10 February 2020

author name string

Shinya Takahata

series ordinal

1

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10 February 2020

Yaxin Yu

series ordinal

2

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10 February 2020

language of work or name

English

0 references

publication date

12 August 2011

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Journal of Biological Chemistry

10 February 2020

published in

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10 February 2020

volume

286

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issue

40

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10 February 2020

page(s)

34809-34819

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Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter.

10 February 2020

cites work

1 reference

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SCFCdc4 enables mating type switching in yeast by cyclin-dependent kinase-mediated elimination of the Ash1 transcriptional repressor.

27 July 2018

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Inducible gene expression: diverse regulatory mechanisms

27 July 2018

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Daughter-specific transcription factors regulate cell size control in budding yeast

27 July 2018

1 reference

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The E2F functional analogue SBF recruits the Rpd3(L) HDAC, via Whi5 and Stb1, and the FACT chromatin reorganizer, to yeast G1 cyclin promoters

27 July 2018

1 reference

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The logic of chromatin architecture and remodelling at promoters

27 July 2018

1 reference

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FACT and Asf1 regulate nucleosome dynamics and coactivator binding at the HO promoter

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

27 July 2018

1 reference

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FACT and the reorganized nucleosome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

The transcriptional coactivators SAGA, SWI/SNF, and mediator make distinct contributions to activation of glucose-repressed genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Stb1 collaborates with other regulators to modulate the G1-specific transcriptional circuit

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Different genetic functions for the Rpd3(L) and Rpd3(S) complexes suggest competition between NuA4 and Rpd3(S)

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

SWI/SNF binding to the HO promoter requires histone acetylation and stimulates TATA-binding protein recruitment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

The yeast Mediator complex and its regulation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Mediator and the mechanism of transcriptional activation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Cell cycle-dependent transcription in yeast: promoters, transcription factors, and transcriptomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Daughter-specific repression of Saccharomyces cerevisiae HO: Ash1 is the commander

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

TATA-binding protein mutants that are lethal in the absence of the Nhp6 high-mobility-group protein

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Hyperacetylation of chromatin at the ADH2 promoter allows Adr1 to bind in repressed conditions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

The Swi5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase gcn5p

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Sok2 regulates yeast pseudohyphal differentiation via a transcription factor cascade that regulates cell-cell adhesion

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Structure and ligand of a histone acetyltransferase bromodomain

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

The MSN1 and NHP6A genes suppress SWI6 defects in Saccharomyces cerevisiae

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Identification of asymmetrically localized determinant, Ash1p, required for lineage-specific transcription of the yeast HO gene

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Epistasis analysis of suppressor mutations that allow HO expression in the absence of the yeast SW15 transcriptional activator

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Cell cycle control of the yeast HO gene: cis- and trans-acting regulators

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Elevated recombination rates in transcriptionally active DNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Getting started with yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Parallel pathways of gene regulation: homologous regulators SWI5 and ACE2 differentially control transcription of HO and chitinase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter.

27 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

Mutations in the pho2 (bas2) transcription factor that differentially affect activation with its partner proteins bas1, pho4, and swi5.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

Ash1, a daughter cell-specific protein, is required for pseudohyphal growth of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

Forkhead proteins control the outcome of transcription factor binding by antiactivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

Interdependent recruitment of SAGA and Srb mediator by transcriptional activator Gcn4p

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

Functional and physical interactions within the middle domain of the yeast mediator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

Mediator-nucleosome interaction

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

Roles for the Saccharomyces cerevisiae SDS3, CBK1 and HYM1 genes in transcriptional repression by SIN3.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

The bromodomain of Gcn5p interacts in vitro with specific residues in the N terminus of histone H4

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186355

At least 1400 base pairs of 5′-flanking DNA is required for the correct expression of the HO gene in yeast

26 September 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

Changes in a SWI4,6-DNA-binding complex occur at the time of HO gene activation in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

Cdk1 Triggers Association of RNA Polymerase to Cell Cycle Promoters Only after Recruitment of the Mediator by SBF

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.281626

The protein kinase Pho85 is required for asymmetric accumulation of the Ash1 protein in Saccharomyces cerevisiae

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21840992

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M111.281626

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21840992%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21840992%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

PubMed publication ID

21840992

1 reference