Building classifier ensembles for B-cell epitope prediction (Q35271965)

7 August 2017

Building classifier ensembles for B-cell epitope prediction (English)

1 reference

7 August 2017

2

Vasant Honavar

1 reference

7 August 2017

Yasser EL-Manzalawy

1

1 reference

PubMed ID

25048130

7 August 2017

language of work or name

English

0 references

publication date

1 January 2014

1 reference

Methods in Molecular Biology

7 August 2017

1 reference

7 August 2017

1184

1 reference

7 August 2017

285-294

1 reference

Conformational B-cell epitope prediction on antigen protein structures: a review of current algorithms and comparison with common binding site prediction methods

7 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

In silico models for B-cell epitope recognition and signaling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Reliable B cell epitope predictions: impacts of method development and improved benchmarking

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

An assessment on epitope prediction methods for protozoa genomes.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Recent advances in B-cell epitope prediction methods

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Predicting flexible length linear B-cell epitopes.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

SEPPA: a computational server for spatial epitope prediction of protein antigens

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

COBEpro: a novel system for predicting continuous B-cell epitopes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

ElliPro: a new structure-based tool for the prediction of antibody epitopes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Predicting linear B-cell epitopes using string kernels

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Prediction of residues in discontinuous B-cell epitopes using protein 3D structures

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Improved method for predicting linear B-cell epitopes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Bcipep: a database of B-cell epitopes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Prediction of linear B-cell epitopes using amino acid pair antigenicity scale.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385709

Correlation between the location of antigenic sites and the prediction of turns in proteins

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25048130

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/978-1-4939-1115-8_15

1 reference

release_xtng25fribhxjj2s2fd7v6ufmy

7 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/xtng25fribhxjj2s2fd7v6ufmy

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

4385709

1 reference

7 August 2017

1 reference

PubMed ID

25048130