Impact of chromatin structure on sequence variability in the human genome (Q35281209)

7 August 2017

Impact of chromatin structure on sequence variability in the human genome (English)

1 reference

7 August 2017

Michael Y Tolstorukov

1

1 reference

7 August 2017

Natalia Volfovsky

2

1 reference

7 August 2017

Robert M Stephens

3

1 reference

7 August 2017

Peter J Park

4

1 reference

7 August 2017

13 March 2011

1 reference

Nature Structural & Molecular Biology

7 August 2017

1 reference

7 August 2017

18

1 reference

7 August 2017

4

1 reference

7 August 2017

510-515

1 reference

https://scigraph.springernature.com/pub.10.1038/nsmb.2012

7 August 2017

0 references

cites work

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

From DNA sequence to transcriptional behaviour: a quantitative approach

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Unstable tandem repeats in promoters confer transcriptional evolvability

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

The DNA-encoded nucleosome organization of a eukaryotic genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

The UCSC Genome Browser Database: update 2009

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

The impact of the nucleosome code on protein-coding sequence evolution in yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

On the nature of human housekeeping genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Nucleosome positioning in human HOX gene clusters

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Mapping and sequencing of structural variation from eight human genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Dynamic regulation of nucleosome positioning in the human genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Genome-wide approaches to studying chromatin modifications

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

A high-resolution atlas of nucleosome occupancy in yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Nucleosome positioning signals in genomic DNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Chromatin structure and evolution in the human genome.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

A genomic code for nucleosome positioning

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Periodicity of SNP distribution around transcription start sites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

The pitch of chromatin DNA is reflected in its nucleotide sequence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Sequence periodicities in chicken nucleosome core DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

CpG-rich islands and the function of DNA methylation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Comparative subunit structure of HeLa, yeast, and chicken erythrocyte chromatin

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Nucleosome positioning as a determinant of exon recognition

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Nucleosome positioning and gene regulation: advances through genomics

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Splicing regulation: from a parts list of regulatory elements to an integrated splicing code

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

High-resolution profiling of histone methylations in the human genome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

Gene splice sites correlate with nucleosome positions

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188321

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

26 September 2018

1 reference

Evolutionary consequences of nonrandom damage and repair of chromatin domains

21 January 2018

1 reference

DNA-repair by photolyase reveals dynamic properties of nucleosome positioning in vivo.

21 January 2018

1 reference

Evolutionary footprints of nucleosome positions in yeast

21 January 2018

1 reference

Evidence that localized variation in primate sequence divergence arises from an influence of nucleosome placement on DNA repair.

21 January 2018

1 reference

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

21 January 2018

1 reference

Nucleosome organization in the Drosophila genome.

21 January 2018

1 reference

Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

21 January 2018

1 reference

Poly(dA:dT) tracts: major determinants of nucleosome organization

21 January 2018

1 reference

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

21 January 2018

1 reference

Sequence context affects the rate of short insertions and deletions in flies and primates

21 January 2018

1 reference

Chromatin organization marks exon-intron structure

21 January 2018

1 reference

Biased chromatin signatures around polyadenylation sites and exons

21 January 2018

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

21 January 2018

1 reference

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

21 January 2018

1 reference

Molecular biology. The structure of change

21 January 2018

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.2012

1 reference

7 August 2017

1 reference

7 August 2017

1 reference