Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads. (Q35286142)

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22 January 2020

title

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads (English)

1 reference

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22 January 2020

1 reference

1 reference

1

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22 January 2020

Angela Goncalves

3

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22 January 2020

Lachlan Coin

4

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22 January 2020

Sylvia Richardson

5

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22 January 2020

Alexandra M. Lewin

6

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22 January 2020

author name string

Shu-Yi Su

2

1 reference

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22 January 2020

language of work or name

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10 February 2011

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22 January 2020

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22 January 2020

volume

12

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22 January 2020

issue

2

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22 January 2020

page(s)

R13

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https://scigraph.springernature.com/pub.10.1186/gb-2011-12-2-r13

22 January 2020

exact match

0 references

cites work

A pipeline for RNA-seq data processing and quality assessment

1 reference

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Differential expression analysis for sequence count data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Sex-specific parent-of-origin allelic expression in the mouse brain

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

High-resolution analysis of parent-of-origin allelic expression in the mouse brain

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Modeling non-uniformity in short-read rates in RNA-Seq data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Inferring combined CNV/SNP haplotypes from genotype data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Biases in Illumina transcriptome sequencing caused by random hexamer priming

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Regulatory divergence in Drosophila revealed by mRNA-seq.

27 July 2018

1 reference

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Transcriptome genetics using second generation sequencing in a Caucasian population

27 July 2018

1 reference

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Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

RNA-Seq gene expression estimation with read mapping uncertainty

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

The Sequence Alignment/Map format and SAMtools

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

TopHat: discovering splice junctions with RNA-Seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Statistical inferences for isoform expression in RNA-Seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Mapping and quantifying mammalian transcriptomes by RNA-Seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

X inactivation in females with X-linked disease.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3188795

X Inactivation in Females with X-Linked Disease

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21310039

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2011-12-2-R13

1 reference

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Dimensions Publication ID

22 January 2020

0 references

1 reference

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22 January 2020

1 reference