Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins (Q35304431)

7 August 2017

Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins (English)

1 reference

7 August 2017

1 reference

14

Geoffrey D Ower

1 reference

7 August 2017

Glen M Borchert

1

1 reference

7 August 2017

Nathaniel W Holton

2

1 reference

7 August 2017

Jonathan D Williams

3

1 reference

7 August 2017

William L Hernan

4

1 reference

7 August 2017

Ian P Bishop

5

1 reference

7 August 2017

Joel A Dembosky

6

1 reference

7 August 2017

James E Elste

7

1 reference

7 August 2017

Nathaniel S Gregoire

8

1 reference

7 August 2017

Jee-Ah Kim

9

1 reference

7 August 2017

Wesley W Koehler

10

1 reference

7 August 2017

Joe C Lengerich

11

1 reference

7 August 2017

Arianna A Medema

12

1 reference

7 August 2017

Marilyn A Nguyen

13

1 reference

7 August 2017

Michelle A Rarick

15

1 reference

7 August 2017

Brooke N Strong

16

1 reference

7 August 2017

Nicholas J Tardi

17

1 reference

7 August 2017

Nathan M Tasker

18

1 reference

7 August 2017

Darren J Wozniak

19

1 reference

7 August 2017

Craig Gatto

20

1 reference

7 August 2017

Erik D Larson

21

1 reference

7 August 2017

1 May 2011

1 reference

7 August 2017

Mobile genetic elements

1 reference

7 August 2017

1

1 reference

7 August 2017

8-17

1 reference

7 August 2017

1

1 reference

7 August 2017

miRNAs in human cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

miRBase: integrating microRNA annotation and deep-sequencing data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Research on plant abiotic stress responses in the post-genome era: past, present and future

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Genomic gems: SINE RNAs regulate mRNA production

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Origin, biogenesis, and activity of plant microRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Transposon tools hopping in vertebrates.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

VisualRepbase: an interface for the study of occurrences of transposable element families

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

The take and give between retrotransposable elements and their hosts

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Endogenous retroviruses in systemic response to stress signals

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

A family of human microRNA genes from miniature inverted-repeat transposable elements

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

RNA polymerase III transcribes human microRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Complications in mammalian microRNA target prediction

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

RNAhybrid: microRNA target prediction easy, fast and flexible

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

SINEs and LINEs: symbionts of eukaryotic genomes with a common tail

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Human microRNA prediction through a probabilistic co-learning model of sequence and structure

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Identification of hundreds of conserved and nonconserved human microRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction method

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Rfam: annotating non-coding RNAs in complete genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Fast and effective prediction of microRNA/target duplexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Prediction of mammalian microRNA targets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Targeting survival: integration site selection by retroviruses and LTR-retrotransposons

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Rfam: an RNA family database

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Prediction of plant microRNA targets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

A microRNA in a multiple-turnover RNAi enzyme complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Micro RNAs are complementary to 3' UTR sequence motifs that mediate negative post-transcriptional regulation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

An extensive class of small RNAs in Caenorhabditis elegans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

The Sequence of the Human Genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

A mobile threat to genome stability: The impact of non-LTR retrotransposons upon the human genome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Marsupial-specific microRNAs evolved from marsupial-specific transposable elements

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Stress management: how cells take control of their transposons

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

miRGen: a database for the study of animal microRNA genomic organization and function

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Mutator transposon in maize and MULEs in the plant genome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Systematic identification of microRNA functions by combining target prediction and expression profiling

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Repbase Update, a database of eukaryotic repetitive elements

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

LINEs, SINEs and processed pseudogenes: parasitic strategies for genome modeling

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Weighted sequence motifs as an improved seeding step in microRNA target prediction algorithms

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Evolutionary impact of human Alu repetitive elements

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

B2 RNA binds directly to RNA polymerase II to repress transcript synthesis

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190270

Mammalian microRNAs derived from genomic repeats

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.4161%2FMGE.1.1.15766

MicroRNAs: at the root of plant development?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22016841

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cloning of novel repeat-associated small RNAs derived from hairpin precursors in Oryza sativa

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22016841

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4161/MGE.1.1.15766

1 reference

7 August 2017

1 reference

7 August 2017

1 reference