Examination of prokaryotic multipartite genome evolution through experimental genome reduction (Q35361504)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25340565%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

title

Examination of prokaryotic multipartite genome evolution through experimental genome reduction (English)

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21 February 2020

1

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21 February 2020

author name string

Allyson M MacLean

2

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21 February 2020

Branislava Milunovic

3

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21 February 2020

G Brian Golding

4

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21 February 2020

Turlough M Finan

5

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21 February 2020

publication date

23 October 2014

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21 February 2020

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21 February 2020

volume

10

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21 February 2020

issue

10

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21 February 2020

page(s)

e1004742

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Creative Commons Attribution 4.0 International

21 February 2020

copyright license

start time

23 October 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics.

27 July 2018

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An ABC-type cobalt transport system is essential for growth of Sinorhizobium meliloti at trace metal concentrations

27 July 2018

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Plasmids with a chromosome-like role in rhizobia

27 July 2018

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Inositol catabolism, a key pathway in sinorhizobium meliloti for competitive host nodulation

27 July 2018

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Why genes evolve faster on secondary chromosomes in bacteria

27 July 2018

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27 July 2018

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Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria

27 July 2018

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Control of gluconate utilization in Sinorhizobium meliloti

27 July 2018

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Differential replication dynamics for large and small Vibrio chromosomes affect gene dosage, expression and location

27 July 2018

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Bacillus minimum genome factory: effective utilization of microbial genome information

27 July 2018

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Mapping the Sinorhizobium meliloti 1021 solute-binding protein-dependent transportome

27 July 2018

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An integrated approach to functional genomics: construction of a novel reporter gene fusion library for Sinorhizobium meliloti

27 July 2018

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Emergent properties of reduced-genome Escherichia coli.

27 July 2018

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The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons

27 July 2018

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Divided genomes: negotiating the cell cycle in prokaryotes with multiple chromosomes

27 July 2018

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A genetic locus necessary for rhamnose uptake and catabolism in Rhizobium leguminosarum bv. trifolii

27 July 2018

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Computational inference of scenarios for alpha-proteobacterial genome evolution

27 July 2018

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Identification of rhtX and fptX, novel genes encoding proteins that show homology and function in the utilization of the siderophores rhizobactin 1021 by Sinorhizobium meliloti and pyochelin by Pseudomonas aeruginosa, respectively

27 July 2018

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Natural genomic design in Sinorhizobium meliloti: novel genomic architectures

27 July 2018

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Wavelet to predict bacterial ori and ter: a tendency towards a physical balance

27 July 2018

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Complete Genomic Sequence of Nitrogen-fixing Symbiotic Bacterium Bradyrhizobium japonicum USDA110

27 July 2018

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Determination of the transcriptome of Vibrio cholerae during intraintestinal growth and midexponential phase in vitro

27 July 2018

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Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid

27 July 2018

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The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti

27 July 2018

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Fructose uptake in Sinorhizobium meliloti is mediated by a high-affinity ATP-binding cassette transport system

27 July 2018

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Root mucilage from pea and its utilization by rhizosphere bacteria as a sole carbon source

27 July 2018

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Galactosides in the rhizosphere: utilization by Sinorhizobium meliloti and development of a biosensor.

27 July 2018

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Genetic organization of the region encoding regulation, biosynthesis, and transport of rhizobactin 1021, a siderophore produced by Sinorhizobium meliloti

27 July 2018

1 reference

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Megaplasmid pRme2011a of Sinorhizobium meliloti is not required for viability

27 July 2018

1 reference

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A novel Sinorhizobium meliloti operon encodes an alpha-glucosidase and a periplasmic-binding-protein-dependent transport system for alpha-glucosides

27 July 2018

1 reference

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Methylmalonyl-CoA mutase encoding gene of Sinorhizobium meliloti

27 July 2018

1 reference

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alpha-Galactoside uptake in Rhizobium meliloti: isolation and characterization of agpA, a gene encoding a periplasmic binding protein required for melibiose and raffinose utilization

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Availability of iron to Pseudomonas fluorescens in rhizosphere and bulk soil evaluated with an ice nucleation reporter gene.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Presence of two independent chromosomes in the Brucella melitensis 16M genome

27 July 2018

1 reference

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Physical and genetic characterization of symbiotic and auxotrophic mutants of Rhizobium meliloti induced by transposon Tn5 mutagenesis

27 July 2018

1 reference

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Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes

27 July 2018

1 reference

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Mutants of Rhizobium meliloti defective in succinate metabolism

27 July 2018

1 reference

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Two plasmids other than the nodulation plasmid are necessary for formation of nitrogen-fixing nodules by Rhizobium leguminosarum

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Analysis of a 1600-kilobase Rhizobium meliloti megaplasmid using defined deletions generated in vivo

27 July 2018

1 reference

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Replicon-dependent differentiation of symbiosis-related genes in Sinorhizobium strains nodulating Glycine max.

27 July 2018

1 reference

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The thuEFGKAB operon of rhizobia and agrobacterium tumefaciens codes for transport of trehalose, maltitol, and isomers of sucrose and their assimilation through the formation of their 3-keto derivatives.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

The tRNAarg gene and engA are essential genes on the 1.7-Mb pSymB megaplasmid of Sinorhizobium meliloti and were translocated together from the chromosome in an ancestral strain.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Control of hydroxyproline catabolism in Sinorhizobium meliloti

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Genetic characterization of a complex locus necessary for the transport and catabolism of erythritol, adonitol and L-arabitol in Sinorhizobium meliloti

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Glycerol utilization by Rhizobium leguminosarum requires an ABC transporter and affects competition for nodulation.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Oxidative stress sensitivity of engineered Escherichia coli cells with a reduced genome.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

A locus necessary for the transport and catabolism of erythritol in Sinorhizobium meliloti

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Characterization of the contribution to virulence of three large plasmids of avian pathogenic Escherichia coli chi7122 (O78:K80:H9).

26 September 2018

1 reference

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Introducing the bacterial 'chromid': not a chromosome, not a plasmid.

26 September 2018

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Strain competition and agar affect the interaction of rhizobia with rice.

26 September 2018

1 reference

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Identification of a hydroxyproline transport system in the legume endosymbiont Sinorhizobium meliloti

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Regulation and properties of PstSCAB, a high-affinity, high-velocity phosphate transport system of Sinorhizobium meliloti.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Global changes in gene expression in Sinorhizobium meliloti 1021 under microoxic and symbiotic conditions

26 September 2018

1 reference

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A phylogenetic analysis of the pSymB replicon from the Sinorhizobium meliloti genome reveals a complex evolutionary history

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Redundancy in periplasmic binding protein-dependent transport systems for trehalose, sucrose, and maltose in Sinorhizobium meliloti.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

The composite genome of the legume symbiont Sinorhizobium meliloti

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Low-resolution sequencing of Rhodobacter sphaeroides 2.4.1T: chromosome II is a true chromosome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Biotin and other water-soluble vitamins are key growth factors for alfalfa root colonization by Rhizobium meliloti 1021.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

General transduction in Rhizobium meliloti

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4207669

Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004742

No evidence for elemental-based streamlining of prokaryotic genomes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004742

Inference and Analysis of the Relative Stability of Bacterial Chromosomes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004742

Direct selection for curing and deletion of Rhizobium plasmids using transposons carrying the Bacillus subtilis sacB gene

21 January 2018

1 reference

12 December 2020

Differences in chromosome number and genome rearrangements in the genus Brucella

1 reference

12 December 2020

The expression of a novel antisense gene mediates incompatibility within the large repABC family of alpha-proteobacterial plasmids

1 reference

12 December 2020

Sinorhizobium meliloti pSymB carries genes necessary for arabinose transport and catabolism

1 reference

12 December 2020

Genome evolution within the alpha Proteobacteria: why do some bacteria not possess plasmids and others exhibit more than one different chromosome?

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1004742

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25340565%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25340565%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

PubMed publication ID

25340565

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25340565%20AND%20SRC:MED&resulttype=core&format=json