Small open reading frames: current prediction techniques and future prospect. (Q35465100)

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8 February 2020

review article

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title

Small open reading frames: current prediction techniques and future prospect (English)

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8 February 2020

6

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8 February 2020

author name string

Haoyu Cheng

1

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8 February 2020

Wai Soon Chan

2

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8 February 2020

Zhixiu Li

3

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8 February 2020

Dan Wang

4

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8 February 2020

Song Liu

5

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8 February 2020

publication date

1 September 2011

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Current Protein and Peptide Science

8 February 2020

published in

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8 February 2020

volume

12

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8 February 2020

issue

6

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8 February 2020

page(s)

503-507

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Most "dark matter" transcripts are associated with known genes

8 February 2020

cites work

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sORF finder: a program package to identify small open reading frames with high coding potential

12 July 2018

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The Universal Protein Resource (UniProt) in 2010

12 July 2018

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Small membrane proteins found by comparative genomics and ribosome binding site models.

12 July 2018

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12 July 2018

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12 July 2018

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Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.

12 July 2018

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Peptides encoded by short ORFs control development and define a new eukaryotic gene family

12 July 2018

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A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection

12 July 2018

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Identifying bacterial genes and endosymbiont DNA with Glimmer

12 July 2018

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In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists

12 July 2018

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EGASP: the human ENCODE Genome Annotation Assessment Project

12 July 2018

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Computational approaches to gene prediction.

12 July 2018

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Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae

12 July 2018

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Comparative genomics as a tool for gene discovery.

12 July 2018

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ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes.

12 July 2018

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ROCR: visualizing classifier performance in R

12 July 2018

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Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

12 July 2018

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12 July 2018

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Recent advances in gene structure prediction

12 July 2018

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The low molecular mass subunits of the photosynthetic supracomplex, photosystem II.

12 July 2018

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Global analysis of protein expression in yeast

12 July 2018

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Global analysis of protein localization in budding yeast

12 July 2018

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Vertebrate gene predictions and the problem of large genes

12 July 2018

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Sequencing and comparison of yeast species to identify genes and regulatory elements

12 July 2018

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Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs

12 July 2018

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Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.

12 July 2018

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Replication initiation proteins regulate a developmental checkpoint in Bacillus subtilis

12 July 2018

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Improved microbial gene identification with GLIMMER

12 July 2018

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Heuristic approach to deriving models for gene finding

12 July 2018

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12 July 2018

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12 July 2018

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Prediction of complete gene structures in human genomic DNA

12 July 2018

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12 July 2018

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

12 July 2018

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Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons.

12 July 2018

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Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis.

12 July 2018

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TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

26 September 2018

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Small open reading frames: beautiful needles in the haystack.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3203329

10.2174/138920311796957667

26 September 2018

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21787300%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

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8 February 2020

PubMed publication ID

21787300

1 reference