Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer (Q35476712)

8 August 2017

Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer (English)

1 reference

8 August 2017

Peng Wang

1

1 reference

8 August 2017

Shangwei Ning

2

1 reference

8 August 2017

Yunpeng Zhang

3

1 reference

8 August 2017

Ronghong Li

4

1 reference

8 August 2017

Jingrun Ye

5

1 reference

8 August 2017

Zuxianglan Zhao

6

1 reference

8 August 2017

Hui Zhi

7

1 reference

8 August 2017

Tingting Wang

8

1 reference

8 August 2017

Zheng Guo

9

1 reference

8 August 2017

Xia Li

10

1 reference

8 August 2017

language of work or name

English

0 references

publication date

23 March 2015

1 reference

8 August 2017

Nucleic Acids Research

1 reference

8 August 2017

43

1 reference

8 August 2017

7

1 reference

8 August 2017

3478-3489

1 reference

Creative Commons Attribution-NonCommercial 4.0 International

8 August 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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12 July 2018

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12 July 2018

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Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer.

12 July 2018

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12 July 2018

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H19 promotes pancreatic cancer metastasis by derepressing let-7's suppression on its target HMGA2-mediated EMT.

12 July 2018

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Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance

12 July 2018

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Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer

12 July 2018

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miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions

12 July 2018

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starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data

12 July 2018

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Comprehensive analysis of long non-coding RNAs in ovarian cancer reveals global patterns and targeted DNA amplification

12 July 2018

1 reference

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Comprehensive analysis of the functional microRNA-mRNA regulatory network identifies miRNA signatures associated with glioma malignant progression.

12 July 2018

1 reference

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HMDD v2.0: a database for experimentally supported human microRNA and disease associations

12 July 2018

1 reference

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The imprinted H19 lncRNA antagonizes let-7 microRNAs.

12 July 2018

1 reference

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Non-coding RNAs turn up the heat: an emerging layer of novel regulators in the mammalian heat shock response

12 July 2018

1 reference

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Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis

12 July 2018

1 reference

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CLIP-based prediction of mammalian microRNA binding sites

12 July 2018

1 reference

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Systematic transcriptome wide analysis of lncRNA-miRNA interactions

12 July 2018

1 reference

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MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

LncRNADisease: a database for long-non-coding RNA-associated diseases.

12 July 2018

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Competing endogenous RNA database

12 July 2018

1 reference

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Comprehensive genomic characterization of squamous cell lung cancers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Identification of hsa-miR-335 as a prognostic signature in gastric cancer

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

miRcode: a map of putative microRNA target sites in the long non-coding transcriptome

12 July 2018

1 reference

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Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

12 July 2018

1 reference

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Modular regulatory principles of large non-coding RNAs

12 July 2018

1 reference

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TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

12 July 2018

1 reference

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Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

12 July 2018

1 reference

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Comparative profiling of plasma proteome from breast cancer patients reveals thrombospondin-1 and BRWD3 as serological biomarkers

12 July 2018

1 reference

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An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Molecular mechanisms of long noncoding RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

lincRNAs act in the circuitry controlling pluripotency and differentiation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

12 July 2018

miRNAs in human cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

miRBase: integrating microRNA annotation and deep-sequencing data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Emerging roles for natural microRNA sponges

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Long noncoding RNAs with enhancer-like function in human cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

A multilevel data integration resource for breast cancer study

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

miR-17-5p promotes human breast cancer cell migration and invasion through suppression of HBP1

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

microRNA 17/20 inhibits cellular invasion and tumor metastasis in breast cancer by heterotypic signaling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Target mRNA abundance dilutes microRNA and siRNA activity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Ensembl Genomes: extending Ensembl across the taxonomic space

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

SubpathwayMiner: a software package for flexible identification of pathways

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Long noncoding RNAs: functional surprises from the RNA world

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Evolution and functions of long noncoding RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

MicroRNAs: target recognition and regulatory functions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Most mammalian mRNAs are conserved targets of microRNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Endogenous human microRNAs that suppress breast cancer metastasis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

The microRNA.org resource: targets and expression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

The role of site accessibility in microRNA target recognition

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Target mimicry provides a new mechanism for regulation of microRNA activity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Activation of p53 by MEG3 non-coding RNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

RNA maps reveal new RNA classes and a possible function for pervasive transcription

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

The c-Myc oncogene directly induces the H19 noncoding RNA by allele-specific binding to potentiate tumorigenesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Differential expression of TCEAL1 in esophageal cancers by custom cDNA microarray analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Fast and effective prediction of microRNA/target duplexes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Overexpression of an ectopic H19 gene enhances the tumorigenic properties of breast cancer cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Large-scale transcriptional activity in chromosomes 21 and 22

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Predicting microRNA targets and functions: traps for the unwary.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402541

Competitive endogenous RNAs cannot alter microRNA function in vivo

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25800746

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKV233

1 reference

8 August 2017

1 reference

8 August 2017

1 reference