Deep phylogenetic incongruence in the angiosperm clade Rosidae (Q35478647)

8 August 2017

Deep phylogenetic incongruence in the angiosperm clade Rosidae (English)

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8 August 2017

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3

Pamela S Soltis

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8 August 2017

2

Douglas E Soltis

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8 August 2017

6

Zhiduan Chen

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8 August 2017

5

J Gordon Burleigh

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8 August 2017

Miao Sun

1

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PubMed ID

25463749

8 August 2017

Xinyu Zhu

series ordinal

4

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PubMed ID

25463749

8 August 2017

language of work or name

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18 November 2014

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Molecular Phylogenetics and Evolution

8 August 2017

11

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based on heuristic

inferred from page(s)

published in

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8 August 2017

83

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8 August 2017

156-166

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Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae)

8 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

The age and diversification of the angiosperms re-revisited

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, and models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Towards a phylogenetic nomenclature of Tracheophyta

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Discordance of species trees with their most likely gene trees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Gene tree discordance, phylogenetic inference and the multispecies coalescent

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Phylogenomics and the reconstruction of the tree of life

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Broad phylogenomic sampling improves resolution of the animal tree of life

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Advances in the floral structural characterization of the major subclades of Malpighiales, one of the largest orders of flowering plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Maternal inheritance of chloroplast genome and paternal inheritance of mitochondrial genome in bananas (Musa acuminata)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Automated removal of noisy data in phylogenomic analyses.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Robust Inference of Monocot Deep Phylogeny Using an Expanded Multigene Plastid Data Set

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Angiosperm phylogeny based on matK sequence information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Difficulties in Detecting Hybridization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Using supernetworks to distinguish hybridization from lineage-sorting

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A Phylogeny of the Monocots, as Inferred from rbcL and atpA Sequence Variation, and a Comparison of Methods for Calculating Jackknife and Bootstrap Values

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A statistical approach for distinguishing hybridization and incomplete lineage sorting.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A survey of tricolpate (eudicot) phylogenetic relationships

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

MAFFT version 5: improvement in accuracy of multiple sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A functional phylogenomic view of the seed plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Reconstructing patterns of reticulate evolution in plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Estimating species phylogenies using coalescence times among sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Gene Trees in Species Trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Inferring phylogeny despite incomplete lineage sorting

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

High transmission of paternal plastid DNA in alfalfa plants demonstrated by restriction fragment polymorphic analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

The Hows and Whys of Cytoplasmic Inheritance in Seed Plants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Nonuniform concerted evolution and chloroplast capture: heterogeneity of observed introgression patterns in three molecular data partition phylogenies of Asian Mitella (saxifragaceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Microevolutionary processes generate phylogenomic discordance at ancient divergences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

The phylogeny of the Asteridae sensu lato based on chloroplast ndhF gene sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Trees within trees: phylogeny and historical associations.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

The root of the mammalian tree inferred from whole mitochondrial genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Genome-scale phylogeny and the detection of systematic biases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Angiosperm phylogeny inferred from sequences of four mitochondrial genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A method of alignment masking for refining the phylogenetic signal of multiple sequence alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Interspecific Pollen Competition as a Reproductive Barrier Between Sympatric Species of Helianthus (Asteraceae)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Genealogical trees, coalescent theory and the analysis of genetic polymorphisms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Phylogenetic relationships in the monocot order Commelinales, with a focus on PhilydraceaeThis paper is one of a selection of papers published in the Special Issue on Systematics Research

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Inference of phylogenetic relationships among the subfamilies of grasses (Poaceae: Poales) using meso-scale exemplar-based sampling of the plastid genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Testing hybridization hypotheses based on incongruent gene trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Paternal inheritance of plastids in Medicago sativa

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Paternally biased cpDNA inheritance in Turnera ulmifolia (Turneraceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

The genome of woodland strawberry (Fragaria vesca)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Insect phylogenomics: exploring the source of incongruence using new transcriptomic data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Resolving the evolutionary relationships of molluscs with phylogenomic tools

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

The role of hybridization in plant speciation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A 567‐Taxon Data Set for Angiosperms: The Challenges Posed by Bayesian Analyses of Large Data Sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Angiosperm phylogeny: 17 genes, 640 taxa

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A rapid bootstrap algorithm for the RAxML Web servers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

A model for chloroplast capture

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Rosid radiation and the rapid rise of angiosperm-dominated forests

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Deciphering ancient rapid radiations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

The inheritance of organelle genes and genomes: patterns and mechanisms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Paternal inheritance of chloroplast DNA in interspecific hybrids in the genus Larrea (Zygophyllaceae)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Phylogenetic signal variation in the genomes of Medicago (Fabaceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Rapid radiation and dispersal out of the Qinghai-Tibetan Plateau of an alpine plant lineage Rhodiola (Crassulaceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.11.003

10.1016/J.YMPEV.2014.11.003

7 January 2021

Identifiers

DOI

1 reference

8 August 2017

1 reference

PubMed ID

25463749