Characterization of hibernating ribosomes in mammalian cells (Q35559950)

8 August 2017

title

Characterization of hibernating ribosomes in mammalian cells (English)

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8 August 2017

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1

Dawid Krokowski

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8 August 2017

Francesca Gaccioli

2

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8 August 2017

Mithu Majumder

3

1 reference

8 August 2017

Michael R Mullins

4

1 reference

8 August 2017

Celvie L Yuan

5

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8 August 2017

Barbara Papadopoulou

6

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8 August 2017

William C Merrick

7

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8 August 2017

Anton A Komar

8

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8 August 2017

Derek Taylor

9

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8 August 2017

Maria Hatzoglou

10

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8 August 2017

publication date

15 August 2011

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8 August 2017

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8 August 2017

volume

10

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8 August 2017

issue

16

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8 August 2017

page(s)

2691-2702

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Cellular IRES-mediated translation: the war of ITAFs in pathophysiological states.

8 August 2017

cites work

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Crystal structure of the eukaryotic ribosome

12 July 2018

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12 July 2018

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Nutrient withdrawal rescues growth factor-deprived cells from mTOR-dependent damage

12 July 2018

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Structure of hibernating ribosomes studied by cryoelectron tomography in vitro and in situ

12 July 2018

1 reference

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Endoplasmic reticulum stress response in an INS-1 pancreatic beta-cell line with inducible expression of a folding-deficient proinsulin

12 July 2018

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Structure of the 100S ribosome in the hibernation stage revealed by electron cryomicroscopy

12 July 2018

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eIF2alpha phosphorylation tips the balance to apoptosis during osmotic stress

12 July 2018

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Could stress granules be involved in age-related diseases?

12 July 2018

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Tissue- and age-dependent expression of RNA-binding proteins that influence mRNA turnover and translation

12 July 2018

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mTOR's role in ageing: protein synthesis or autophagy?

12 July 2018

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The mechanism of eukaryotic translation initiation and principles of its regulation

12 July 2018

1 reference

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Eukaryotic stress granules: the ins and outs of translation

12 July 2018

1 reference

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Formation of 100S ribosomes in Staphylococcus aureus by the hibernation promoting factor homolog SaHPF.

12 July 2018

1 reference

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Comprehensive Molecular Structure of the Eukaryotic Ribosome

12 July 2018

1 reference

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The ribosome: some hard facts about its structure and hot air about its evolution

12 July 2018

1 reference

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What recent ribosome structures have revealed about the mechanism of translation

12 July 2018

1 reference

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Depletion of the signal recognition particle receptor inactivates ribosomes in Escherichia coli

12 July 2018

1 reference

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The hnRNA-binding proteins hnRNP L and PTB are required for efficient translation of the Cat-1 arginine/lysine transporter mRNA during amino acid starvation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Following movement of the L1 stalk between three functional states in single ribosomes.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Structural dynamics of the ribosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Differential control of the CCAAT/enhancer-binding protein beta (C/EBPbeta) products liver-enriched transcriptional activating protein (LAP) and liver-enriched transcriptional inhibitory protein (LIP) and the regulation of gene expression during the

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

An efficient in vitro translation system from mammalian cells lacking the translational inhibition caused by eIF2 phosphorylation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Amino acid starvation induces the SNAT2 neutral amino acid transporter by a mechanism that involves eukaryotic initiation factor 2alpha phosphorylation and cap-independent translation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Coping with stress: eIF2 kinases and translational control

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Identification of S6 kinase 1 as a novel mammalian target of rapamycin (mTOR)-phosphorylating kinase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Ribosome inactivation for preservation: concepts and reservations

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Structural basis for the control of translation initiation during stress

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

RMF inactivates ribosomes by covering the peptidyl transferase centre and entrance of peptide exit tunnel

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Phosphorylation of the alpha subunit of eukaryotic initiation factor 2 is required for activation of NF-kappaB in response to diverse cellular stresses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

The GCN2 eIF2alpha kinase is required for adaptation to amino acid deprivation in mice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

The acidic ribosomal P proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Ribosome-associated protein that inhibits translation at the aminoacyl-tRNA binding stage

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Dynamic interaction of BiP and ER stress transducers in the unfolded-protein response

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

A protein residing at the subunit interface of the bacterial ribosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

A quantitative sucrose gradient analysis of the translational activity of 18 mRNA species in testes from adult mice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Growth phase coupled modulation of Escherichia coli ribosomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: growth phase- and growth rate-dependent control

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Insulin-dependent stimulation of protein synthesis by phosphorylation of a regulator of 5'-cap function

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Ribosome modulation factor: stationary growth phase-specific inhibitor of ribosome functions from Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Studies of DNA damage in rat pancreas and liver by 6-diazo-5-oxo-L-norleucine, ethyl diazoacetate and azaserine

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

The ribosomal RNA of hamster-mouse hybrid cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Dissociation and reassociation of skeletal muscle ribosomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Polysome stability in relaxed and stringent strain of Escherichia coli during amino acid starvation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Effect of amino acids on ribosome aggregation and protein synthesis in perfused rat liver

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

The role of ABCE1 in eukaryotic posttermination ribosomal recycling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Activities of Escherichia coli ribosomes in IF3 and RMF change to prepare 100S ribosome formation on entering the stationary growth phase.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Role of HPF (hibernation promoting factor) in translational activity in Escherichia coli.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

The influence of ribosome modulation factor on the survival of stationary-phase Escherichia coli during acid stress.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Functional characterization of IRESes by an inhibitor of the RNA helicase eIF4A.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Ribosome modulation factor protects Escherichia coli during heat stress, but this may not be dependent on ribosome dimerisation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

The ribosome modulation factor (RMF) binding site on the 100S ribosome of Escherichia coli

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219539

Structural Relationships Among the Ribosomal Stalk Proteins from the Three Domains of Life

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.4161%2FCC.10.16.16844

Two proteins, YfiA and YhbH, associated with resting ribosomes in stationary phase Escherichia coli

21 January 2018

1 reference

12 December 2020

Pivotal role of the P1 N-terminal domain in the assembly of the mammalian ribosomal stalk and in the proteosynthetic activity

1 reference

12 December 2020

Expression of ribosome modulation factor (RMF) in Escherichia coli requires ppGpp

1 reference

12 December 2020

On the significance of ribosome dimers in extracts of animal cells

1 reference

12 December 2020

Quantitative evaluation of polysomes and ribosomes by density gradient centrifugation and electron microscopy

1 reference

12 December 2020

The RNA of a dimerized ribosomal structure from hamster cells

1 reference

12 December 2020

Transitory increase of run-off single ribosomes in rat adrenocortical cells, following acth administration, in vivo

1 reference

12 December 2020

Enhancement of cell death due to decrease in Mg2+ uptake by OmpC (cation-selective porin) deficiency in ribosome modulation factor-deficient mutant

1 reference

12 December 2020

The ribosomal stalk binds to translation factors IF2, EF-Tu, EF-G and RF3 via a conserved region of the L12 C-terminal domain

1 reference

12 December 2020

Identifiers

DOI

10.4161/CC.10.16.16844

1 reference

8 August 2017

1 reference

8 August 2017

1 reference