Oncotator: cancer variant annotation tool (Q35565104)

8 August 2017

Oncotator: cancer variant annotation tool (English)

1 reference

8 August 2017

6

Gordon Saksena

0 references

Gad Getz

8

object named as

Gad Getz

0 references

Trevor J Pugh

object named as

Trevor J Pugh

5

0 references

Matthew Meyerson

object named as

Matthew Meyerson

7

0 references

author name string

Alex H Ramos

1

1 reference

8 August 2017

Lee Lichtenstein

2

1 reference

8 August 2017

Manaswi Gupta

3

1 reference

8 August 2017

Michael S Lawrence

4

1 reference

8 August 2017

language of work or name

English

0 references

publication date

16 March 2015

1 reference

8 August 2017

1 reference

8 August 2017

36

1 reference

8 August 2017

4

1 reference

8 August 2017

E2423-9

1 reference

A map of human genome variation from population-scale sequencing

8 August 2017

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

A method and server for predicting damaging missense mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Signatures of mutational processes in human cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Sequence analysis of mutations and translocations across breast cancer subtypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

The genomic complexity of primary human prostate cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Diagnostic clinical genome and exome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Integrated genomic analyses of ovarian carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Comprehensive molecular characterization of urothelial bladder carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Initial genome sequencing and analysis of multiple myeloma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

A landscape of driver mutations in melanoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Identification of deleterious mutations within three human genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Emerging landscape of oncogenic signatures across human cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

The variant call format and VCFtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Identifying a high fraction of the human genome to be under selective constraint using GERP++.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Somatic mutation of CDKN1B in small intestine neuroendocrine tumors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

A census of human cancer genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Identifying novel constrained elements by exploiting biased substitution patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Mutations in the DDR2 kinase gene identify a novel therapeutic target in squamous cell lung cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

GENCODE: the reference human genome annotation for The ENCODE Project

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Oncogenic and sorafenib-sensitive ARAF mutations in lung adenocarcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

DrugBank 3.0: a comprehensive resource for 'omics' research on drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Mutational heterogeneity in cancer and the search for new cancer-associated genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

ClinVar: public archive of relationships among sequence variation and human phenotype

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

PICMI: mapping point mutations on genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

A remarkably simple genome underlies highly malignant pediatric rhabdoid cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Landscape of genomic alterations in cervical carcinomas

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

The genetic landscape of high-risk neuroblastoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Exome sequencing of pleuropulmonary blastoma reveals frequent biallelic loss of TP53 and two hits in DICER1 resulting in retention of 5p-derived miRNA hairpin loop sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Predicting the functional impact of protein mutations: application to cancer genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

GAMES identifies and annotates mutations in next-generation sequencing projects

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

MutationTaster evaluates disease-causing potential of sequence alterations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

dbSNP: the NCBI database of genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

The mutational landscape of head and neck squamous cell carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Ongoing and future developments at the Universal Protein Resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Clinical analysis and interpretation of cancer genome data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

SF3B1 and other novel cancer genes in chronic lymphocytic leukemia

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Human DNA repair genes, 2005.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

Comprehensive molecular characterization of human colon and rectal cancer

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25703262

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Melanoma genome sequencing reveals frequent PREX2 mutations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25703262

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

New Methods for Detecting Lineage-Specific Selection

1 reference

https://api.crossref.org/works/10.1002%2FHUMU.22771

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1002/HUMU.22771

1 reference

8 August 2017

1 reference