Protein identification by mass spectrometry: issues to be considered (Q35579879)

9 August 2017

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title

Protein identification by mass spectrometry: issues to be considered (English)

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9 August 2017

Michael A Baldwin

1

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9 August 2017

6 November 2003

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Molecular & Cellular Proteomics

9 August 2017

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9 August 2017

3

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9 August 2017

1

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9 August 2017

1-9

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PubMed ID

14608001

describes a project that uses

9 August 2017

1 reference

Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Capillary electrophoresis--matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using a vacuum deposition interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Capillary array electrophoresis-MALDI mass spectrometry using a vacuum deposition interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Automatic identification of proteins with a MALDI-quadrupole ion trap mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Protein identification by mass profile fingerprinting.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Use of mass spectrometric molecular weight information to identify proteins in sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Rapid identification of proteins by peptide-mass fingerprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Peptide mass maps: a highly informative approach to protein identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Characterization by tandem mass spectrometry of structural modifications in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Sequence database searches via de novo peptide sequencing by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Functional assignment of the 20 S proteasome from Trypanosoma brucei using mass spectrometry and new bioinformatics approaches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Appendix 5. Nomenclature for peptide fragment ions (positive ions).

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Peptide sequencing by matrix-assisted laser-desorption mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Rapid 'de novo' peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Rapidly switchable matrix-assisted laser desorption/ionization and electrospray quadrupole-time-of-flight mass spectrometry for protein identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

MALDI quadrupole time-of-flight mass spectrometry: a powerful tool for proteomic research

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Matrix-assisted laser desorption/ionization coupled with quadrupole/orthogonal acceleration time-of-flight mass spectrometry for protein discovery, identification, and structural analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

A novel MALDI LIFT-TOF/TOF mass spectrometer for proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Improved peptide charge state assignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Top down characterization of larger proteins (45 kDa) by electron capture dissociation mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

A molecular scanner to automate proteomic research and to display proteome images

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Application of liquid chromatography-mass spectrometry(n) analyses to the characterization of novel glyburide metabolites formed in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Automatic poisson peak harvesting for high throughput protein identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Probability-based validation of protein identifications using a modified SEQUEST algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

OLAV: towards high-throughput tandem mass spectrometry data identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

A statistical model for identifying proteins by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Binding of neural cell adhesion molecules (N-CAMs) to the cellular prion protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Difference gel electrophoresis: a single gel method for detecting changes in protein extracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Accurate quantitation of protein expression and site-specific phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Preparation of stable isotope-incorporated peptide internal standards for field desorption mass spectrometry quantification of peptides in biologic tissue.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Dissection of proteolytic 18O labeling: endoprotease-catalyzed 16O-to-18O exchange of truncated peptide substrates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Mass spectrometric analysis of protein mixtures at low levels using cleavable 13C-isotope-coded affinity tag and multidimensional chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the applicatio

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Immobilized gallium(III) affinity chromatography of phosphopeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

O-GlcNAc turns twenty: functional implications for post-translational modification of nuclear and cytosolic proteins with a sugar

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

Identification of novel sites of O-N-acetylglucosamine modification of serum response factor using quadrupole time-of-flight mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.R300012-MCP200

10.1074/MCP.R300012-MCP200

21 January 2018

Identifiers

DOI

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release_im7zw6czfjeqpbaajppusqyvre

9 August 2017

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Fatcat

https://api.fatcat.wiki/v0/release/im7zw6czfjeqpbaajppusqyvre

mapped directly with Wikidata item

24 November 2022

based on heuristic

PubMed ID

14608001

1 reference

PubMed ID

14608001