MeDuSa: a multi-draft based scaffolder. (Q35587082)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810435%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

title

MeDuSa: a multi-draft based scaffolder (English)

1 reference

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3 March 2020

3

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3 March 2020

Emanuele Bosi

1

1 reference

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3 March 2020

Pietro Liò

6

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3 March 2020

Marco Fondi

9

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3 March 2020

author name string

Beatrice Donati

2

1 reference

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3 March 2020

Sara Brunetti

4

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3 March 2020

Pierluigi Crescenzi

7

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3 March 2020

Renato Fani

8

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3 March 2020

Marie-France Sagot

5

1 reference

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3 March 2020

language of work or name

English

0 references

publication date

25 March 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810435%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

number of pages

9

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

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3 March 2020

volume

31

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3 March 2020

issue

15

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3 March 2020

page(s)

2443-2451

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810435%20AND%20SRC:MED&resulttype=core&format=json

Scaffolder - software for manual genome scaffolding

3 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Scaffolding pre-assembled contigs using SSPACE

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

SOPRA: Scaffolding algorithm for paired reads via statistical optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

SCARPA: scaffolding reads with practical algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Draft genomes of three Antarctic Psychrobacter strains producing antimicrobial compounds against Burkholderia cepacia complex, opportunistic human pathogens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

A comprehensive evaluation of assembly scaffolding tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Phylogenetic comparative assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Reference-assisted chromosome assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Ragout-a reference-assisted assembly tool for bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Versatile and open software for comparing large genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

FPSAC: fast phylogenetic scaffolding of ancient contigs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Algorithm of OMA for large-scale orthology inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Fast scaffolding with small independent mixed integer programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

GAGE: A critical evaluation of genome assemblies and assembly algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Combining de novo and reference-guided assembly with scaffold_builder

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV171

10.1093/BIOINFORMATICS/BTV171

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810435%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/BosiDGBSLCFF15

3 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference