Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints. (Q35589028)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044801%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints (English)

1 reference

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15 January 2020

2

1 reference

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15 January 2020

Istvan Bartha

series ordinal

3

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15 January 2020

5

Amalio Telenti

1 reference

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15 January 2020

author name string

Joke Snoeck

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044801%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Daniel C Douek

series ordinal

4

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15 January 2020

publication date

1 November 2011

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15 January 2020

1 reference

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15 January 2020

volume

8

1 reference

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15 January 2020

page(s)

87

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HIV-1 adaptation to NK-cell-mediated immune pressure

15 January 2020

cites work

1 reference

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Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China

27 July 2018

1 reference

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Follicular helper CD4 T cells (TFH)

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Dynamics of viral evolution and CTL responses in HIV-1 infection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Conflicting selection pressures on T-cell epitopes in HIV-1 subtype B.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Interplay between RNA structure and protein evolution in HIV-1.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Computational analysis of HIV-1 protease protein binding pockets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Constraints on HIV-1 diversity from protein structure

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Sequence Evolution of HIV-1 following Mother-to-Child Transmission

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

TRIM5 suppresses cross-species transmission of a primate immunodeficiency virus and selects for emergence of resistant variants in the new species

27 July 2018

1 reference

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Architecture and secondary structure of an entire HIV-1 RNA genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

A method for the simultaneous estimation of selection intensities in overlapping genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Twin gradients in APOBEC3 edited HIV-1 DNA reflect the dynamics of lentiviral replication

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Properties of overlapping genes are conserved across microbial genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

The causes and consequences of HIV evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spots

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

The anatomy and taxonomy of protein structure

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229471

Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease

27 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-8-87

Error thresholds and the constraints to RNA virus evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-8-87

Rapid evolution of the neutralizing antibody response to HIV type 1 infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-8-87

HIV evolution: CTL escape mutation and reversion after transmission

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-8-87

Coordinate linkage of HIV evolution reveals regions of immunological vulnerability

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1742-4690-8-87

Retrovirus mutation rates and their role in genetic variation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22044801

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22044801

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1742-4690-8-87

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044801%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

15 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22044801%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

22044801

1 reference