Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics. (Q35593088)

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21 December 2019

review article

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title

Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics (English)

1 reference

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21 December 2019

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2

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21 December 2019

Mark Morrison

4

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21 December 2019

Chris McSweeney

7

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21 December 2019

3

Roderick I Mackie

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21 December 2019

author name string

Denis O Krause

1

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21 December 2019

Ann L Rae

5

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21 December 2019

Graeme T Attwood

6

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21 December 2019

publication date

1 December 2003

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FEMS Microbiology Reviews

21 December 2019

published in

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21 December 2019

volume

27

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21 December 2019

issue

5

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21 December 2019

page(s)

663-693

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maintained by WikiProject

21 December 2019

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21 January 2018

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Ligninolytic enzyme production in selected sub-tropical white rot fungi under different culture conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Comparison of lignin peroxidase, horseradish peroxidase and laccase in the oxidation of methoxybenzenes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Natural mediators in the oxidation of polycyclic aromatic hydrocarbons by laccase mediator systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Laccase is essential for lignin degradation by the white-rot fungus Pycnoporus cinnabarinus

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Cloning and characterization of a second laccase gene from the lignin-degrading basidiomycete Pycnoporus cinnabarinus

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Characterization of a novel laccase produced by the wood-rotting fungus Phellinus ribis

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Phylogenetic analysis of methanogens from the bovine rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

How many ruminal bacteria are there?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

A molecular view of microbial diversity and the biosphere

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Bacterial alkaline proteases: molecular approaches and industrial applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Unsuspected diversity among marine aerobic anoxygenic phototrophs

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Genetic diversity in Sargasso Sea bacterioplankton

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Variation in Lignin Content and Composition (Mechanisms of Control and Implications for the Genetic Improvement of Plants).

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

Symposium on 'Nutritional implications of microbial action in the non-ruminal alimentary tract'. Microbes of nutritional importance in the alimentary tract

21 January 2018

1 reference

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7 January 2021

Repeated ruminal dosing of Ruminococcus spp. does not result in persistence, but changes in other microbial populations occur that can be measured with quantitative 16S-rRNA-based probes

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Catalytic properties of the cellulose-binding endoglucanase F from Fibrobacter succinogenes S85.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Two beta-glucosidase activities in Fibrobacter succinogenes S85

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Partial purification and characterization of RalF40I, a class II restriction endonuclease from Ruminococcus albus F-40, which recognizes and cleaves 5'-/GATC-3'

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Characterization of the cellulolytic complex (cellulosome) from Ruminococcus albus

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Subcellular distribution of glycanases and related components in Ruminococcus albus SY3 and their role in cell adhesion to cellulose

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Molecular cloning, nucleotide sequence and characteristics of a xylanase gene (xynA) from Ruminococcus albus 7

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Nucleotide sequence and transcriptional analysis of the celD beta-glucanase gene from Ruminococcus flavefaciens FD-1.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Identification of non-catalytic conserved regions in xylanases encoded by the xynB and xynD genes of the cellulolytic rumen anaerobe Ruminococcus flavefaciens

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Distribution and evolution of the xylanase genes xynA and xynB and their homologues in strains of Butyrivibrio fibrisolvens

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Cellulolytic Bacteria Occurring in the Rumen of Sheep Conditioned to Low-protein Teff Hay

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Identification of the Butyrivibrio fibrisolvens xylosidase gene (xylB) coding region and its expression in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Multiple endoxylanases of Butyrivibrio sp

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Isolation of genes encoding beta-D-xylanase, beta-D-xylosidase and alpha-L-arabinofuranosidase activities from the rumen bacterium Prevotella ruminicola B1(4).

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

A xylan hydrolase gene cluster in Prevotella ruminicola B(1)4: sequence relationships, synergistic interactions, and oxygen sensitivity of a novel enzyme with exoxylanase and beta-(1,4)-xylosidase activities.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Solubilization of lignin by the ruminal anaerobic fungus Neocallimastix patriciarum

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Degradation of fresh ryegrass by methanogenic co-cultures of ruminal fungi grown in the presence or absence of Fibrobacter succinogenes

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Simultaneous saccharification and cofermentation of peracetic acid-pretreated biomass

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

A new family of lipolytic enzymes?

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Purification and partial characterization of two feruloyl esterases from the anaerobic fungus Neocallimastix strain MC-2

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Isolation and characterization of p-coumaroyl esterase from the anaerobic fungus Neocallimastix strain MC-2.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Assay for trans-p-coumaroyl esterase using a specific substrate from plant cell walls

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Establishment of Bacteroides succinogenes and measurement of the main digestive parameters in the rumen of gnotoxenic lambs

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

A novel carbohydrate-binding protein is a component of the plant cell wall-degrading complex of Piromyces equi

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Promoter-like mutants with increased expression of the Escherichia coli uridine phosphorylase structural gene

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Digestion of cell-wall monosaccharides of ryegrass and alfalfa hays by the ruminal bacteria Fibrobacter succinogenes and Butyrivibrio fibrisolvens

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Attachment of different Escherichia coli strains to cultured rumen epithelial cells

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

The adherence of three Streptococcus bovis strains to cells of rumen epithelium primoculture under various conditions

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Characterisation of cellulose-binding proteins that are involved in the adhesion mechanism of Fibrobacter intestinalis DR7

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Digestibility by sheep of total and cell wall monosaccharides of wheat straw treated chemically or chemically plus enzymatically

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Ruminococcus flavefaciens Cell Coat and Adhesion to Cotton Cellulose and to Cell Walls in Leaves of Perennial Ryegrass (Lolium perenne).

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Interactions between rumen bacterial strains during the degradation and utilization of the monosaccharides of barley straw cell-walls

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Binding and degradation of lectins by components of rumen liquor.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

A highly expressed family 1 beta-glucosidase with transglycosylation capacity from the anaerobic fungus Piromyces sp. E2.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Transformation and expression of an anaerobic fungal xylanase in several strains of the rumen bacterium Butyrivibrio fibrisolvens

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

A conjugative transfer system for the rumen bacterium, Butyrivibrio fibrisolvens, based on Tn916-mediated transfer of the Staphylococcus aureus plasmid pUB110

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Conjugal transfer of a shuttle vector from the human colonic anaerobe Bacteroides uniformis to the ruminal anaerobe Prevotella (Bacteroides) ruminicola B(1)4.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

DEGRADATION AND UTILIZATION OF ISOLATED HEMICELLULOSE BY PURE CULTURES OF CELLULOLYTIC RUMEN BACTERIA.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Expression of a modified Neocallimastix patriciarum xylanase in Butyrivibrio fibrisolvens digests more fibre but cannot effectively compete with highly fibrolytic bacteria in the rumen

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Survival of the recombinant Bacteroides thetaiotaomicron strain BTX in in vitro rumen incubations

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Persistence and functional impact of a microbial inoculant on native microbial community structure, nutrient digestion and fermentation characteristics in a rumen model

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Comparison of microbial populations in model and natural rumens using 16S ribosomal RNA-targeted probes

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Ruminal microbial and fermentative changes associated with experimentally induced subacute acidosis in steers

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Development of the cellulolytic microflora in the rumen of lambs transferred into sterile isolators a few days after birth

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Effect of ruminal cellulolytic bacterial concentrations on in situ digestion of forage cellulose

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Isolation and attempted introduction of sugar alcohol-utilizing bacteria in the sheep rumen.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Use of a unique gene sequence as a probe to enumerate a strain of Bacteroides ruminicola introduced into the rumen

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Use of antibiotic resistance mutations to track strains of obligately anaerobic bacteria introduced into the rumen of sheep.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Fermentations by saccharolytic intestinal bacteria

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

The uptake and utilization of Entodinium caudatum, bacteria, free amino acids and glucose by the rumen ciliate Entodinium bursa

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

THE METABOLISM OF ESCHERICHIA COLI AND OTHER BACTERIA BY ENTODINIUM CAUDATUM

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

The role of ciliate protozoa in the lysis of methanogenic archaea in rumen fluid

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Unmodified and recombinant strains of Lactobacillus plantarum are rapidly lost from the rumen by protozoal predation

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Validation of the main modeling methods for the estimation of marker mean retention times in the different compartments of the gastrointestinal tract in sheep

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Mutations of the secondary cell wall

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Effects of supplemental enzymes on nitrogen balance, digestibility of energy and nutrients and on growth and feed efficiency of cattle

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Effect of enzyme preparations on in situ and in vitro degradation and in vivo digestive characteristics of mature cool-season grass forage in beef steers

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Effect of direct-fed fibrolytic enzymes on the lactational performance of dairy cows

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Fibrolytic enzyme treatment of barley grain and source of forage in high-grain diets fed to growing cattle

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Intraruminal supplementation with increasing levels of exogenous polysaccharide-degrading enzymes: effects on nutrient digestion in cattle fed a barley grain diet

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Effects of an exogenous enzyme preparation on microbial protein synthesis, enzyme activity and attachment to feed in the Rumen Simulation Technique (Rusitec)

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Effects of citrus molasses distillers solubles and molasses on rumen parameters and lactation

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Influence of supplementary fibrolytic enzymes on the fermentation of corn and grass silages by mixed ruminal microorganisms in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Effect of direct-fed fibrolytic enzymes on the digestive characteristics of a forage-based diet fed to beef steers

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Ligninolytic characteristics of Pleurotus ostreatus strain F6 and its monokaryotic protoplast derivative P19

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Degradation of bisphenol A by the lignin-degrading enzyme, manganese peroxidase, produced by the white-rot basidiomycete, Pleurotus ostreatus

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Purification, crystallisation and X-ray diffraction study of fully functional laccases from two ligninolytic fungi

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Copper and cadmium increase laccase activity in Pleurotus ostreatus

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

A fungal metabolite mediates degradation of non-phenolic lignin structures and synthetic lignin by laccase

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Transcriptional regulation of laccase and cellulase genes during growth and fruiting of Lentinula edodes on supplemented sawdust

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate

1 reference

https://api.crossref.org/works/10.1016%2FS0168-6445%2803%2900072-X

7 January 2021

10.1016/S0168-6445(03)00072-X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14638418%20AND%20SRC:MED&resulttype=core&format=json

21 December 2019

1 reference