A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines (Q35626593)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Thomas Bukur

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Uğur Şahin

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

2

Martin Löwer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

author name string

John C Castle

series ordinal

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

publication date

3 August 2014

1 reference

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7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

volume

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

issue

8

1 reference

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7 March 2020

page(s)

e954893

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

Immunomic, genomic and transcriptomic characterization of CT26 colorectal carcinoma

7 March 2020

cites work

1 reference

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HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity

27 July 2018

1 reference

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HLA ligandome tumor antigen discovery for personalized vaccine approach

27 July 2018

1 reference

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Database of T cell-defined human tumor antigens: the 2013 update

27 July 2018

1 reference

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Revealing selection in cancer using the predicted functional impact of cancer mutations. Application to nomination of cancer drivers

27 July 2018

1 reference

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MHCcluster, a method for functional clustering of MHC molecules

27 July 2018

1 reference

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Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells

27 July 2018

1 reference

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HLA typing from RNA-Seq sequence reads

27 July 2018

1 reference

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In silico prediction of tumor antigens derived from functional missense mutations of the cancer gene census

27 July 2018

1 reference

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BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Measuring ambiguity in HLA typing methods

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Targeting the tumor mutanome for personalized vaccination therapy

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Exploiting the mutanome for tumor vaccination.

27 July 2018

1 reference

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A user's guide to the encyclopedia of DNA elements (ENCODE)

27 July 2018

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Exploring the genomes of cancer cells: progress and promise

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Applications for T-cell epitope queries and tools in the Immune Epitope Database and Analysis Resource

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Cell line-based platforms to evaluate the therapeutic efficacy of candidate anticancer agents

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Mapping and quantifying mammalian transcriptomes by RNA-Seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

The costs of using unauthenticated, over-passaged cell lines: how much more data do we need?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Patterns of somatic mutation in human cancer genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Immunological characterization of missense mutations occurring within cytotoxic T cell-defined p53 epitopes in HLA-A*0201+ squamous cell carcinomas of the head and neck

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

HLA class I and II genotype of the NCI-60 cell lines

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

The selection of tumor variants with altered expression of classical and nonclassical MHC class I molecules: implications for tumor immune escape.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

The reagent database at dbMHC.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Engagement of CD160 receptor by HLA-C is a triggering mechanism used by circulating natural killer (NK) cells to mediate cytotoxicity.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

The use of HLA-A*0201-transfected K562 as standard antigen-presenting cells for CD8(+) T lymphocytes in IFN-gamma ELISPOT assays

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Locus-specific analysis of human leukocyte antigen class I expression in melanoma cell lines

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Tumor progression in four mammary epithelial cell lines derived from the same patient

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Molecular analysis of MHC-class-I alterations in human tumor cell lines.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

HLA-binding properties of tumor neoepitopes in humans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

The clinical relevance of cancer cell lines.

25 September 2018

1 reference

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Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Exploiting the glioblastoma peptidome to discover novel tumour-associated antigens for immunotherapy.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

A census of predicted mutational epitopes suitable for immunologic cancer control.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

SYFPEITHI: database for searching and T-cell epitope prediction

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Epitope landscape in breast and colorectal cancer.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

Down-regulation of HLA class I antigen processing molecules: an immune escape mechanism of renal cell carcinoma?

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4355981

25 September 2018

The IMGT/HLA database

1 reference

Crossref

https://api.crossref.org/works/10.4161%2F21624011.2014.954893

An ID card for tumour cell lines: HLA typing can help

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25960936

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Modulation of MHC gene expression in human breast carcinoma cells by hormones

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25960936

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4161/21624011.2014.954893

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

PubMed publication ID

25960936

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25960936%20AND%20SRC:MED&resulttype=core&format=json