Effects of target length on the hybridization efficiency and specificity of rRNA-based oligonucleotide microarrays (Q35633989)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17071797%20AND%20SRC:MED&resulttype=core&format=json

21 December 2019

title

Effects of target length on the hybridization efficiency and specificity of rRNA-based oligonucleotide microarrays (English)

1 reference

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21 December 2019

1

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21 December 2019

author name string

Huiling Guo

series ordinal

2

1 reference

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21 December 2019

Jer-Horng Wu

series ordinal

3

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21 December 2019

language of work or name

English

0 references

publication date

27 October 2006

1 reference

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Applied and Environmental Microbiology

21 December 2019

published in

1 reference

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21 December 2019

volume

73

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21 December 2019

issue

1

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21 December 2019

page(s)

73-82

1 reference

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Use of microarrays with different probe sizes for monitoring gene expression.

21 December 2019

cites work

1 reference

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Nucleotide exchange and excision technology (NExT) DNA shuffling: a robust method for DNA fragmentation and directed evolution

27 July 2018

1 reference

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Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray.

27 July 2018

1 reference

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Oligonucleotide microarrays in microbial diagnostics

27 July 2018

1 reference

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Nucleic acid amplification strategies for DNA microarray-based pathogen detection

27 July 2018

1 reference

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Development and validation of a diagnostic microbial microarray for methanotrophs

27 July 2018

1 reference

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Sequence versus Structure for the Direct Detection of 16S rRNA on Planar Oligonucleotide Microarrays

27 July 2018

1 reference

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The impact of nucleic acid secondary structure on PNA hybridization

27 July 2018

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In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes

27 July 2018

1 reference

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Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes

27 July 2018

1 reference

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Random DNA fragmentation with endonuclease V: application to DNA shuffling

27 July 2018

1 reference

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Metal ion-catalyzed nucleic acid alkylation and fragmentation

27 July 2018

1 reference

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High-density microarray of small-subunit ribosomal DNA probes

27 July 2018

1 reference

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Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses

27 July 2018

1 reference

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Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays

27 July 2018

1 reference

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Secondary structure prediction and structure-specific sequence analysis of single-stranded DNA.

27 July 2018

1 reference

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Minimising the secondary structure of DNA targets by incorporation of a modified deoxynucleoside: implications for nucleic acid analysis by hybridisation

27 July 2018

1 reference

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Molecular interactions on microarrays

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Chemical methods of DNA and RNA fluorescent labeling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

DNA analysis and diagnostics on oligonucleotide microchips

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Implication of RNA structure on antisense oligonucleotide hybridization kinetics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Comparison of different labeling methods for the production of labeled target DNA for microarray hybridization.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Mechanistic approach to the problem of hybridization efficiency in fluorescent in situ hybridization.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Amplicon secondary structure prevents target hybridization to oligonucleotide microarrays

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Radical-generating coordination complexes as tools for rapid and effective fragmentation and fluorescent labeling of nucleic acids for microchip hybridization

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1797121

Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment

25 September 2018

1 reference

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Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach.

25 September 2018

1 reference

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Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes.

25 September 2018

1 reference

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Immobilization of DNA in polyacrylamide gel for the manufacture of DNA and DNA-oligonucleotide microchips.

25 September 2018

1 reference

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A study of oligonucleotide reassociation using large arrays of oligonucleotides synthesised on a glass support

25 September 2018

1 reference

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Optimization of fragmentation conditions for microarray analysis of viral RNA

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17071797

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Challenges in applying microarrays to environmental studies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17071797

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/AEM.01468-06

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17071797%20AND%20SRC:MED&resulttype=core&format=json

21 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17071797%20AND%20SRC:MED&resulttype=core&format=json

21 December 2019

PubMed publication ID

17071797

1 reference