Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS. (Q35666164)

9 August 2017

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title

Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS. (English)

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9 August 2017

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Alexey I. Nesvizhskii

object named as

Alexey I Nesvizhskii

series ordinal

1

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Ruedi Aebersold

series ordinal

2

object named as

Ruedi Aebersold

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9 August 2017

1 February 2004

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9 August 2017

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9 August 2017

9

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9 August 2017

4

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9 August 2017

173-181

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Mass spectrometry-based proteomics

9 August 2017

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7 January 2021

Protein chip technology

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'Top down' protein characterization via tandem mass spectrometry

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Direct analysis of protein complexes using mass spectrometry

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Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

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Stable isotope-coded proteomic mass spectrometry

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Toward deciphering the knowledge encrypted in large datasets.

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Data analysis--the Achilles heel of proteomics

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

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Probability-based protein identification by searching sequence databases using mass spectrometry data

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Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

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SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database.

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OLAV: towards high-throughput tandem mass spectrometry data identification

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A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases

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De novo peptide sequencing via tandem mass spectrometry

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Automated interpretation of low-energy collision-induced dissociation spectra by SeqMS, a software aid for de novo sequencing by tandem mass spectrometry

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A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry.

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A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry

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PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

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Improved peptide sequencing using isotope information inherent in tandem mass spectra.

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Error-tolerant identification of peptides in sequence databases by peptide sequence tags

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MultiTag: multiple error-tolerant sequence tag search for the sequence-similarity identification of proteins by mass spectrometry

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GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model

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Peptide sequence motif analysis of tandem MS data with the SALSA algorithm

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

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A statistical model for identifying proteins by tandem mass spectrometry

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The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the applicatio

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Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis

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Preprocessing of tandem mass spectrometric data to support automatic protein identification

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7 January 2021

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Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20.

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Code developments to improve the efficiency of automated MS/MS spectra interpretation

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Improved peptide charge state assignment.

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Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides

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Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation.

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Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry

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DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

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CHOMPER: a bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

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Probability-based validation of protein identifications using a modified SEQUEST algorithm

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A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores

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PRISM, a generic large scale proteomic investigation strategy for mammals

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Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

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Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses.

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Gel based isoelectric focusing of peptides and the utility of isoelectric point in protein identification.

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What does it mean to identify a protein in proteomics?

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Further advances in the development of a data interchange standard for proteomics data

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Identifiers

DOI

1 reference

release_nra3rzyzl5atlcrsudldfrftca

9 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/nra3rzyzl5atlcrsudldfrftca

24 November 2022

mapped directly with Wikidata item

PubMed ID

14960397

1 reference

PubMed ID

14960397