RNA splicing control: yet another gene regulatory role for long nuclear noncoding RNAs (Q35667587)

9 August 2017

title

RNA splicing control: yet another gene regulatory role for long nuclear noncoding RNAs (English)

1 reference

9 August 2017

author

Kannanganattu V Prasanth

series ordinal

3

object named as

Kannanganattu V Prasanth

1 reference

9 August 2017

2

Vidisha Tripathi

1 reference

9 August 2017

Xinying Zong

1

1 reference

9 August 2017

publication date

1 November 2011

1 reference

9 August 2017

1 reference

9 August 2017

volume

8

1 reference

9 August 2017

issue

6

1 reference

9 August 2017

page(s)

968-977

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SON controls cell-cycle progression by coordinated regulation of RNA splicing

9 August 2017

cites work

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The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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SON is a spliceosome-associated factor required for mitotic progression.

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Alternative splicing: global insights

12 July 2018

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Son is essential for nuclear speckle organization and cell cycle progression

12 July 2018

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12 July 2018

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12 July 2018

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Paraspeckles: nuclear bodies built on long noncoding RNA

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

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12 July 2018

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

12 July 2018

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

12 July 2018

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MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

12 July 2018

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The SR protein family of splicing factors: master regulators of gene expression

12 July 2018

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3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA

12 July 2018

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

12 July 2018

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12 July 2018

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Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

12 July 2018

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The splicing-factor oncoprotein SF2/ASF activates mTORC1.

12 July 2018

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NRED: a database of long noncoding RNA expression

12 July 2018

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Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs

12 July 2018

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Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

12 July 2018

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Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

12 July 2018

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Alu element-mediated gene silencing

12 July 2018

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SR proteins and related factors in alternative splicing.

12 July 2018

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A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition

12 July 2018

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Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock

12 July 2018

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Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

12 July 2018

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Specific expression of long noncoding RNAs in the mouse brain

12 July 2018

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Regulation of alternative splicing by reversible protein phosphorylation

12 July 2018

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Long, abundantly expressed non-coding transcripts are altered in cancer

12 July 2018

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The expanding RNA polymerase III transcriptome

12 July 2018

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Prognostic significance of drug-regulated genes in high-grade osteosarcoma

12 July 2018

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The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.

12 July 2018

1 reference

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

12 July 2018

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

12 July 2018

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Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

12 July 2018

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RNA and protein actors in X-chromosome inactivation

12 July 2018

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XIST RNA exhibits nuclear retention and exhibits reduced association with the export factor TAP/NXF1.

12 July 2018

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The gene encoding the splicing factor SF2/ASF is a proto-oncogene

12 July 2018

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Transcriptional noise and the fidelity of initiation by RNA polymerase II.

12 July 2018

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A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains

12 July 2018

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Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Human sat III and Drosophila hsr omega transcripts: a common paradigm for regulation of nuclear RNA processing in stressed cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Alternative splicing: new insights from global analyses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Phenotypic characterization of endometrial stromal sarcoma of the uterus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Cell motility is controlled by SF2/ASF through alternative splicing of the Ron protooncogene

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Regulating gene expression through RNA nuclear retention

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

A new frontier for molecular medicine: noncoding RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Non-coding RNAs: new players in eukaryotic biology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Regulation of nuclear receptor activity by a pseudouridine synthase through posttranscriptional modification of steroid receptor RNA activator

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

B2 RNA binds directly to RNA polymerase II to repress transcript synthesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Genomic analysis of mouse retinal development

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Stress-induced transcription of satellite III repeats.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Distribution of NF-kappaB-binding sites across human chromosome 22

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Challenging the dogma: the hidden layer of non‐protein‐coding RNAs in complex organisms

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Mechanisms of alternative pre-messenger RNA splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Human chromosomes 9, 12, and 15 contain the nucleation sites of stress-induced nuclear bodies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Stress-induced nuclear bodies are sites of accumulation of pre-mRNA processing factors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Omega speckles - a novel class of nuclear speckles containing hnRNPs associated with noncoding hsr-omega RNA in Drosophila

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

The human homologue of the yeast splicing factor prp6p contains multiple TPR elements and is stably associated with the U5 snRNP via protein-protein interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

RNA splicing: What has phosphorylation got to do with it?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Intergenic transcription and transinduction of the human beta-globin locus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position, and distance of the enhancer relative to the gene

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

N-myc mRNA forms an RNA-RNA duplex with endogenous antisense transcripts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Nucleation of nuclear bodies by RNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Protein phosphorylation and the nuclear organization of pre-mRNA splicing

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Transcriptomic and genomic analysis of human hepatocellular carcinomas and hepatoblastomas

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

SLIRP, a small SRA binding protein, is a nuclear receptor corepressor

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Non-coding RNA directed DNA demethylation of Sphk1 CpG island.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

Spatial expression of the hsr-omega (93D) gene in different tissues of Drosophila melanogaster and identification of promoter elements controlling its developmental expression

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256421

The Functional Genomics of Noncoding RNA

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.4161%2FRNA.8.6.17606

Post-transcriptional regulation of thyroid hormone receptor expression by cis-acting sequences and a naturally occurring antisense RNA

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21941126

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure and dynamics of hnRNP-labelled nuclear bodies induced by stress treatments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21941126

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Paraspeckles: a novel nuclear domain

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21941126

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4161/RNA.8.6.17606

1 reference

9 August 2017

1 reference

9 August 2017

1 reference