Spontaneous Deletion of an "ORFanage" Region Facilitates Host Adaptation in a "Photosynthetic" Cyanophage (Q35692560)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26177354%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

title

Spontaneous Deletion of an "ORFanage" Region Facilitates Host Adaptation in a "Photosynthetic" Cyanophage (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26177354%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

1 reference

1 reference

Blanca Perez-Sepulveda

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26177354%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Branko Rihtman

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26177354%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

David J Scanlan

6

1 reference

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19 February 2020

author name string

Richard J Puxty

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26177354%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

David J Evans

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26177354%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Andrew D Millard

5

1 reference

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19 February 2020

language of work or name

English

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publication date

15 July 2015

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full work available at URL

19 February 2020

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4503421

0 references

published in

PLOS One

1 reference

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19 February 2020

volume

10

1 reference

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19 February 2020

issue

7

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19 February 2020

page(s)

e0132642

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Creative Commons Attribution 4.0 International

19 February 2020

copyright license

start time

15 July 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4503421/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Composite conserved promoter-terminator motifs (PeSLs) that mediate modular shuffling in the diverse T4-like myoviruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Antagonistic coevolution of marine planktonic viruses and their hosts.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

The global virome: not as big as we thought?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Rapid diversification of coevolving marine Synechococcus and a virus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Fast gapped-read alignment with Bowtie 2

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Marine cyanophages: tinkering with the electron transport chain

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Comparative metagenomics of microbial traits within oceanic viral communities

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Mobile regulatory cassettes mediate modular shuffling in T4-type phage genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Genome evolution and adaptation in a long-term experiment with Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Photosystem I gene cassettes are present in marine virus genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

The Sequence Alignment/Map format and SAMtools

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Modeling the fitness consequences of a cyanophage-encoded photosynthesis gene

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Marine viruses--major players in the global ecosystem

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Marine ecosystems: bacterial photosynthesis genes in a virus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

12 July 2018

Bacteriophage T4 Genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Antagonistic coevolution between a bacterium and a bacteriophage

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Scrutinizing virus genome termini by high-throughput sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Phylogenomics of T4 cyanophages: lateral gene transfer in the 'core' and origins of host genes.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Carrying photosynthesis genes increases ecological fitness of cyanophage in silico

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

The headful packaging nuclease of bacteriophage T4.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Novel Role for Phycoerythrin in a Marine Cyanobacterium, Synechococcus Strain DC2.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4503421

Viruses and Nutrient Cycles in the Sea

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0132642

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0132642

Exploring the Vast Diversity of Marine Viruses

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0132642

Marine viruses exploit their host's two-component regulatory system in response to resource limitation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26177354

12 December 2020

inferred from PubMed ID database lookup

DNA requirements in vivo for phage T4 packaging

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26177354

12 December 2020

inferred from PubMed ID database lookup

Circular Permutation Analysis of Phage T4 DNA by Electron Microscopy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26177354

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0132642

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26177354%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26177354%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

PubMed publication ID

26177354

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26177354%20AND%20SRC:MED&resulttype=core&format=json