Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis. (Q35720230)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17372224%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

title

Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis (English)

1 reference

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27 December 2019

Bacillus subtilis

1 reference

1

1 reference

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27 December 2019

Melanie B Berkmen

series ordinal

2

1 reference

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27 December 2019

author name string

Alan D Grossman

series ordinal

3

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27 December 2019

language of work or name

English

0 references

publication date

19 March 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17372224%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

27 December 2019

published in

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27 December 2019

volume

104

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27 December 2019

issue

13

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27 December 2019

page(s)

5608-5613

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Nutritional control of elongation of DNA replication by (p)ppGpp

27 December 2019

cites work

1 reference

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Transcription regulatory elements are punctuation marks for DNA replication

27 July 2018

1 reference

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Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication

27 July 2018

1 reference

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Independence of replisomes in Escherichia coli chromosomal replication

27 July 2018

1 reference

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Mechanisms of transcription-replication collisions in bacteria

27 July 2018

1 reference

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The replication-related organization of bacterial genomes.

27 July 2018

1 reference

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Gene essentiality determines chromosome organisation in bacteria

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

A salvage pathway for protein structures: tmRNA and trans-translation

27 July 2018

1 reference

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27 July 2018

Bacteriophage T4 Genome

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A large dispersed chromosomal region required for chromosome segregation in sporulating cells of Bacillus subtilis

27 July 2018

1 reference

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Replication fork collapse at replication terminator sequences

27 July 2018

1 reference

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Two separate DNA sequences within oriC participate in accurate chromosome segregation in Bacillus subtilis.

27 July 2018

1 reference

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27 July 2018

Phi29 family of phages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Replication fork pausing and recombination or "gimme a break"

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Resolution of head-on collisions between the transcription machinery and bacteriophage phi29 DNA polymerase is dependent on RNA polymerase translocation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Suppression of initiation defects of chromosome replication in Bacillus subtilis dnaA and oriC-deleted mutants by integration of a plasmid replicon into the chromosomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

When replication forks stop

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Instability of inhibited replication forks in E. coli.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

When polymerases collide: replication and the transcriptional organization of the E. coli chromosome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Detection and possible role of two large nondivisible zones on the Escherichia coli chromosome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

A replication fork barrier at the 3' end of yeast ribosomal RNA genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Effects of chromosomal inversion on cell fitness in Escherichia coli K-12.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Overreplication of the origin region in the dnaB37 mutant of Bacillus subtilis: postinitiation control of chromosomal replication

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Orientation of genes in the Bacillus subtilis chromosome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Consequences of replication fork movement through transcription units in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Genetics of bacterial ribosomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Characterization of the global transcriptional responses to different types of DNA damage and disruption of replication in Bacillus subtilis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

A transcriptional response to replication status mediated by the conserved bacterial replication protein DnaA.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Transcription/replication collisions cause bacterial transcription units to be longer on the leading strand of replication.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Essentiality, not expressiveness, drives gene-strand bias in bacteria.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

The importance of repairing stalled replication forks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

Bacteriophage phi29 DNA replication arrest caused by codirectional collisions with the transcription machinery

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

The DNA replication fork can pass RNA polymerase without displacing the nascent transcript

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1838449

DNA replication fork pause sites dependent on transcription

25 September 2018

1 reference

12 December 2020

RuvAB acts at arrested replication forks

1 reference

12 December 2020

Subcellular positioning of the origin region of the Bacillus subtilis chromosome is independent of sequences within oriC, the site of replication initiation, and the replication initiator DnaA

1 reference

12 December 2020

Movement of replicating DNA through a stationary replisome

1 reference

12 December 2020

Chromosomal constraints in Gram-positive bacteria revealed by artificial inversions

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0608999104

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17372224%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

0 references

1 reference

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27 December 2019

PubMed publication ID

17372224

1 reference