Identification and Validation of Evolutionarily Conserved Unusually Short Pre-mRNA Introns in the Human Genome (Q35723325)

9 August 2017

Identification and Validation of Evolutionarily Conserved Unusually Short Pre-mRNA Introns in the Human Genome (English)

1 reference

9 August 2017

Makoto K Shimada

1

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author name string

Noriko Sasaki-Haraguchi

series ordinal

2

1 reference

PubMed ID

25961948

9 August 2017

Akila Mayeda

series ordinal

3

1 reference

PubMed ID

25961948

9 August 2017

language of work or name

English

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publication date

7 May 2015

1 reference

International Journal of Molecular Sciences

9 August 2017

1 reference

9 August 2017

16

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9 August 2017

10376-10388

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9 August 2017

5

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Creative Commons Attribution 4.0 International

9 August 2017

start time

7 May 2015

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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1 reference

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The significant other: splicing by the minor spliceosome

12 July 2018

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Mechanistic insights into human pre-mRNA splicing of human ultra-short introns: potential unusual mechanism identifies G-rich introns

12 July 2018

1 reference

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Spliceosome Structure and Function

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

Both size and GC-content of minimal introns are selected in human populations

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

Comparative analysis of information contents relevant to recognition of introns in many species

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

SROOGLE: webserver for integrative, user-friendly visualization of splicing signals

12 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

12 July 2018

1 reference

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Patterns of exon-intron architecture variation of genes in eukaryotic genomes

12 July 2018

1 reference

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Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes

12 July 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

12 July 2018

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Diagnostics of pathogenic splicing mutations: does bioinformatics cover all bases?

12 July 2018

1 reference

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Searching for splicing motifs.

12 July 2018

1 reference

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Spliceosome assembly and composition

12 July 2018

1 reference

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Human branch point consensus sequence is yUnAy

12 July 2018

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The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

12 July 2018

1 reference

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Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes

12 July 2018

1 reference

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Patterns and rates of intron divergence between humans and chimpanzees

12 July 2018

1 reference

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Determinants of the inherent strength of human 5' splice sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

Minimal introns are not "junk".

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

Listening to silence and understanding nonsense: exonic mutations that affect splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

A computational analysis of sequence features involved in recognition of short introns

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

An intronic splicing enhancer binds U1 snRNPs to enhance splicing and select 5' splice sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

Characterization of an intron splice enhancer that regulates alternative splicing of human GH pre-mRNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

Intron definition is required for excision of the minute virus of mice small intron and definition of the upstream exon

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

Cis-acting elements distinct from the 5' splice site promote U1-independent pre-mRNA splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

An intron splicing enhancer containing a G-rich repeat facilitates inclusion of a vertebrate micro-exon.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

An intronic (A/U)GGG repeat enhances the splicing of an alternative intron of the chicken beta-tropomyosin pre-mRNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

Different base per unit length ratios exist in single-stranded RNA and single-stranded DNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

U1-independent pre-mRNA splicing contributes to the regulation of alternative splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4463651

Complementation by SR proteins of pre-mRNA splicing reactions depleted of U1 snRNP

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25961948

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SR proteins can compensate for the loss of U1 snRNP functions in vitro

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25961948

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3390/IJMS160510376

1 reference

9 August 2017

1 reference

9 August 2017

1 reference

PubMed ID

25961948