Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis (Q35736046)

10 August 2017

title

Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis (English)

1 reference

10 August 2017

0 references

1 reference

Katy C Kao

1

1 reference

10 August 2017

Young-Lyeol Yang

2

1 reference

10 August 2017

Riccardo Boscolo

3

1 reference

10 August 2017

Chiara Sabatti

4

1 reference

10 August 2017

Vwani Roychowdhury

5

1 reference

10 August 2017

James C Liao

6

1 reference

10 August 2017

language of work or name

English

0 references

publication date

23 December 2003

1 reference

Proceedings of the National Academy of Sciences of the United States of America

10 August 2017

published in

1 reference

10 August 2017

volume

101

1 reference

10 August 2017

issue

2

1 reference

10 August 2017

page(s)

641-646

1 reference

Network component analysis: reconstruction of regulatory signals in biological systems

10 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Inferring genetic networks and identifying compound mode of action via expression profiling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Transcriptional regulatory networks in Saccharomyces cerevisiae

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Genomic expression programs in the response of yeast cells to environmental changes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Singular value decomposition for genome-wide expression data processing and modeling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Regulation of acetyl coenzyme A synthetase in Escherichia coli.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Gene expression profiling by DNA microarrays and metabolic fluxes in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Genome-wide expression profiling in Escherichia coli K-12

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Regulation of acetate metabolism by protein phosphorylation in enteric bacteria

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Bacterial defense against aging: role of the Escherichia coli ArcA regulator in gene expression, readjusted energy flux and survival during stasis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Differential expression of mal genes under cAMP and endogenous inducer control in nutrient-stressed Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Linear modes of gene expression determined by independent component analysis.

27 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305287101

Global expression profiling of acetate-grown Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305287101

Global gene expression differences associated with changes in glycolytic flux and growth rate in Escherichia coli during the fermentation of glucose and xylose

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305287101

Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0305287101

Regulation of carbon utilization by sulfur availability in Escherichia coli and Salmonella typhimurium.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Regulatory element detection using a probabilistic segmentation model.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

Between feast and famine: endogenous inducer synthesis in the adaptation of Escherichia coli to growth with limiting carbohydrates

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=327201

ADENOSINE 3',5'-PHOSPHATE IN ESCHERICHIA COLI

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14694202

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0305287101

1 reference

10 August 2017

0 references

1 reference

10 August 2017

1 reference