Insertion sequence diversity in archaea (Q35740880)

10 August 2017

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title

Insertion sequence diversity in archaea (English)

1 reference

10 August 2017

0 references

1 reference

J Filée

1

1 reference

10 August 2017

P Siguier

series ordinal

2

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10 August 2017

M Chandler

series ordinal

3

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10 August 2017

publication date

1 March 2007

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Microbiology and Molecular Biology Reviews

10 August 2017

published in

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10 August 2017

volume

71

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10 August 2017

issue

1

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10 August 2017

page(s)

121-157

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Selective forces for the origin of the eukaryotic nucleus

10 August 2017

cites work

1 reference

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12 July 2018

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Metabolic and evolutionary relationships among Pyrococcus Species: genetic exchange within a hydrothermal vent environment.

12 July 2018

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Phylogenetic diversity and ecology of environmental Archaea

12 July 2018

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Active site sharing and subterminal hairpin recognition in a new class of DNA transposases

12 July 2018

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Transposition of ISHp608, member of an unusual family of bacterial insertion sequences

12 July 2018

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12 July 2018

The promiscuous primase

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Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?

12 July 2018

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A proposal to rename the hyperthermophile Pyrococcus woesei as Pyrococcus furiosus subsp. woesei

12 July 2018

1 reference

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The natural history of group I introns

12 July 2018

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Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

12 July 2018

1 reference

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New insertion sequences of Sulfolobus: functional properties and implications for genome evolution in hyperthermophilic archaea.

12 July 2018

1 reference

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Comparative sequence analysis of IS50/Tn5 transposase

12 July 2018

1 reference

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Functional domains of the IS1 transposase: analysis in vivo and in vitro.

12 July 2018

1 reference

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Requirement of IS911 replication before integration defines a new bacterial transposition pathway

12 July 2018

1 reference

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The ring of life provides evidence for a genome fusion origin of eukaryotes

12 July 2018

1 reference

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Regulation of transposition in bacteria.

12 July 2018

1 reference

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Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination

12 July 2018

1 reference

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Shuffling of Sulfolobus genomes by autonomous and non-autonomous mobile elements

12 July 2018

1 reference

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The outs and ins of transposition: from mu to kangaroo

12 July 2018

1 reference

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The IS 1111 Family Members IS 4321 and IS 5075 Have Subterminal Inverted Repeats and Target the Terminal Inverted Repeats of Tn 21 Family Transposons

12 July 2018

1 reference

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An exosome-like complex in Sulfolobus solfataricus

12 July 2018

1 reference

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An active DNA transposon family in rice

12 July 2018

1 reference

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Presence of a characteristic D-D-E motif in IS1 transposase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Stability of mRNA in the hyperthermophilic archaeon Sulfolobus solfataricus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

12 July 2018

Evolution of the Archaea

1 reference

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A target specificity switch in IS911 transposition: the role of the OrfA protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea

12 July 2018

1 reference

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A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont

12 July 2018

1 reference

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Pyrococcus genome comparison evidences chromosome shuffling-driven evolution

12 July 2018

1 reference

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An efficient algorithm for large-scale detection of protein families

12 July 2018

1 reference

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Mobile elements in archaeal genomes

12 July 2018

1 reference

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Tn7: smarter than we thought

12 July 2018

1 reference

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Rolling-circle transposons in eukaryotes

12 July 2018

1 reference

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The complete genome of the crenarchaeon Sulfolobus solfataricus P2

12 July 2018

1 reference

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Structural and functional characterization of IS679 and IS66-family elements

12 July 2018

1 reference

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Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea

12 July 2018

1 reference

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Non-autonomous mobile elements in the crenarchaeon Sulfolobus solfataricus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Evidence of recent lateral gene transfer among hyperthermophilic archaea

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

High spontaneous mutation rate in the hyperthermophilic archaeon Sulfolobus solfataricus is mediated by transposable elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

The trimethylamine methyltransferase gene and multiple dimethylamine methyltransferase genes of Methanosarcina barkeri contain in-frame and read-through amber codons

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

An improved transposon for the halophilic archaeon Haloarcula hispanica.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Did DNA replication evolve twice independently?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Everything in moderation: archaea as 'non-extremophiles'.

12 July 2018

1 reference

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Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins

12 July 2018

1 reference

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Cloning and sequencing of ISC1041 from the archaeon Sulfolobus solfataricus MT-4, a new member of the IS30 family of insertion elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Revised nucleotide sequence of an archaeal insertion element (ISH28) reveals a putative transposase gene

12 July 2018

1 reference

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The rightward gas vesicle operon in Halobacterium plasmid pNRC100: identification of the gvpA and gvpC gene products by use of antibody probes and genetic analysis of the region downstream of gvpC.

12 July 2018

1 reference

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Plasmid pHH1 of Halobacterium salinarium: characterization of the replicon region, the gas vesicle gene cluster and insertion elements

12 July 2018

1 reference

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MUST, a computer package of Management Utilities for Sequences and Trees

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

An insertion element of the extremely thermophilic archaeon Sulfolobus solfataricus transposes into the endogenous beta-galactosidase gene

12 July 2018

1 reference

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The IS4 family of insertion sequences: evidence for a conserved transposase motif

12 July 2018

1 reference

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Novel insertion sequence-like element IS982 in lactococci

12 July 2018

1 reference

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Characterization of plasmids in halobacteria

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Characterization of insertions affecting the expression of the bacterio-opsin gene inHalobacterium halobium

12 July 2018

1 reference

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Structure of the archaebacterial transposable element ISH50

12 July 2018

1 reference

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High-frequency spontaneous mutation in the bacterio-opsin gene in Halobacterium halobium is mediated by transposable elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

A transposable element from Halobacterium halobium which inactivates the bacteriorhodopsin gene

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Multiple copies of iso-insertion sequences of IS1 in Shigella dysenteriae chromosome

12 July 2018

1 reference

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Genetic variability in Halobacterium halobium

12 July 2018

1 reference

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A specific tetracycline-induced, low-molecular-weight RNA encoded by the inverted repeat of Tn10 (IS10).

12 July 2018

1 reference

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ISH51: a large, degenerate family of insertion sequence-like elements in the genome of the archaebacterium, Halobacterium volcanii

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Structure of genes and an insertion element in the methane producing archaebacterium Methanobrevibacter smithii

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Genome organization in Halobacterium halobium: a 70 kb island of more (AT) rich DNA in the chromosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Transposition burst of the ISH27 insertion element family in Halobacterium halobium

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Nucleotide sequence of ISH11, a new Halobacterium halobium insertion element isolated from the plasmid pGRB1.

12 July 2018

1 reference

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Intron phylogeny: a new hypothesis

12 July 2018

1 reference

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Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Palindromic repetitive DNA elements with coding potential in Methanocaldococcus jannaschii.

25 September 2018

1 reference

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Evidence for genetic drift in the diversification of a geographically isolated population of the hyperthermophilic archaeon Pyrococcus

25 September 2018

1 reference

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Unexpected diversity and differential success of DNA transposons in four species of entamoeba protozoans.

25 September 2018

1 reference

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IS231-MIC231 elements from Bacillus cereus sensu lato are modular

25 September 2018

1 reference

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The effect of host-encoded nucleoid proteins on transposition: H-NS influences targeting of both IS903 and Tn10.

25 September 2018

1 reference

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Gene conversion in transposition of Escherichia coli element IS30.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Repeated extragenic sequences in prokaryotic genomes: a proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Novel sequence organization and insertion specificity of IS605 and IS606: chimaeric transposable elements of Helicobacter pylori

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

High-frequency genomic rearrangements involving archaebacterial repeat sequence elements

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

A positive definition of prokaryotes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1847376

Mechanisms of genetic variability in Halobacterium halobium: the purple membrane and gas vesicle mutations

6 December 2018

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12 December 2020

Computer-assisted dissection of rolling circle DNA replication

1 reference

12 December 2020

Periodic extinctions of transposable elements in bacterial lineages: evidence from intragenomic variation in multiple genomes

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12 December 2020

I am what I eat and I eat what I am: acquisition of bacterial genes by giant viruses

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12 December 2020

Transposon-like Correia elements: structure, distribution and genetic exchange between pathogenic Neisseria sp

1 reference

12 December 2020

Crystal structure of a metal ion-bound IS200 transposase

1 reference

12 December 2020

Translational control of IS10 transposition

1 reference

12 December 2020

Identifiers

DOI

10.1128/MMBR.00031-06

1 reference

10 August 2017

1 reference

10 August 2017

1 reference