Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice (Q35783668)

10 August 2017

title

Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice (English)

1 reference

10 August 2017

Nisha Singh

1

1 reference

10 August 2017

Pawan Kumar Jayaswal

2

1 reference

10 August 2017

Kabita Panda

3

1 reference

10 August 2017

Paritra Mandal

4

1 reference

10 August 2017

Vinod Kumar

5

1 reference

10 August 2017

Balwant Singh

6

1 reference

10 August 2017

Shefali Mishra

7

1 reference

10 August 2017

Yashi Singh

8

1 reference

10 August 2017

Renu Singh

9

1 reference

10 August 2017

Vandna Rai

10

1 reference

10 August 2017

Anita Gupta

11

1 reference

10 August 2017

Tilak Raj Sharma

12

1 reference

10 August 2017

Nagendra Kumar Singh

13

1 reference

10 August 2017

language of work or name

English

0 references

publication date

26 June 2015

1 reference

10 August 2017

1 reference

10 August 2017

volume

5

1 reference

10 August 2017

page(s)

11600

1 reference

Creative Commons Attribution 4.0 International

10 August 2017

copyright license

start time

26 June 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/srep11600

0 references

cites work

Identification, characterization, and utilization of single copy genes in 29 angiosperm genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

A map of rice genome variation reveals the origin of cultivated rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

SNP discovery and development of a high-density genotyping array for sunflower

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Genome structural variation discovery and genotyping

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Development and characterization of a high density SNP genotyping assay for cattle

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Unique genes in plants: specificities and conserved features throughout evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

PLINK: a tool set for whole-genome association and population-based linkage analyses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

TASSEL: software for association mapping of complex traits in diverse samples

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Whole genome genotyping technologies on the BeadArray platform

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

The map-based sequence of the rice genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

The Genomes of Oryza sativa: a history of duplications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

A high-density SNP genotyping array for rice biology and molecular breeding.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Genome-wide association studies of 14 agronomic traits in rice landraces.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Single-copy genes define a conserved order between rice and wheat for understanding differences caused by duplication, deletion, and transposition of genes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Rethinking Erlitou: legend, history and Chinese archaeology

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP11600

A marker-assisted backcross approach for developing submergence-tolerant rice cultivars

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481378

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP11600

Development of a Research Platform for Dissecting Phenotype–Genotype Associations in Rice (Oryza spp.)

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP11600

Genome-wide DNA polymorphisms in eliteindicarice inbreds discovered by whole-genome sequencing

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26111882

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP11600

1 reference

10 August 2017

1 reference

10 August 2017

1 reference