Gene capture by Helitron transposons reshuffles the transcriptome of maize (Q35810823)

10 August 2017

Gene capture by Helitron transposons reshuffles the transcriptome of maize (English)

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10 August 2017

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Allison M Barbaglia

1

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10 August 2017

Katarina M Klusman

2

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10 August 2017

John Higgins

3

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10 August 2017

Janine R Shaw

4

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10 August 2017

L Curtis Hannah

5

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10 August 2017

Shailesh K Lal

6

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10 August 2017

language of work or name

English

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publication date

14 December 2011

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10 August 2017

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10 August 2017

190

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10 August 2017

3

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10 August 2017

965-975

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

10 August 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs

11 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

The polychromatic Helitron landscape of the maize genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

11 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

A cornucopia of Helitrons shapes the maize genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Structure-based discovery and description of plant and animal Helitrons

11 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Excision of Helitron transposons in maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Helitron mediated amplification of cytochrome P450 monooxygenase gene in maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Computational prediction and molecular confirmation of Helitron transposons in the maize genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Novel exon combinations generated by alternative splicing of gene fragments mobilized by a CACTA transposon in Glycine max.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Maize haplotype with a helitron-amplified cytidine deaminase gene copy.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Plant genomes: massive changes of the maize genome are caused by Helitrons

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Transposable elements, gene creation and genome rearrangement in flowering plants

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize

11 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Helitrons contribute to the lack of gene colinearity observed in modern maize inbreds

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Gene movement by Helitron transposons contributes to the haplotype variability of maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Two novel arginine/serine (SR) proteins in maize are differentially spliced and utilize non-canonical splice sites

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

The role of barren stalk1 in the architecture of maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Gene expression of a gene family in maize based on noncollinear haplotypes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Treasures in the attic: rolling circle transposons discovered in eukaryotic genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Rolling-circle transposons in eukaryotes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Aberrant splicing of the Drosophila melanogaster phenylalanine hydroxylase pre-mRNA caused by the insertion of a B104/roo transposable element in the Henna locus

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

De novo synthesis of an intron by the maize transposable element Dissociation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

The defect in Fas mRNA expression in MRL/lpr mice is associated with insertion of the retrotransposon, ETn

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

The Mu1 maize transposable element induces tissue-specific aberrant splicing and polyadenylation in two Adh1 mutants

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

The maize transposable Ds1 element is alternatively spliced from exon sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Maize genome structure variation: interplay between retrotransposon polymorphisms and genic recombination.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Pack-MULE transposable elements mediate gene evolution in plants

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

The maize genome contains a helitron insertion

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296258

Transposable element Ds2 of Zea mays influences polyadenylation and splice site selection

24 September 2018

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12 December 2020

The maize transposable element Ds is spliced from RNA

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12 December 2020

Optimal spliced alignment of homologous cDNA to a genomic DNA template

1 reference

12 December 2020

Retrotransposon insertion into the maize waxy gene results in tissue-specific RNA processing

1 reference

12 December 2020

Alternative splicing induced by insertion of retrotransposons into the maize waxy gene

1 reference

12 December 2020

Maize transposable element Ds is differentially spliced from primary transcripts in endosperm and suspension cells

1 reference

12 December 2020

The AG dinucleotide terminating introns is important but not always required for pre-mRNA splicing in the maize endosperm

1 reference

12 December 2020

10.1534/GENETICS.111.136176

Identifiers

DOI

1 reference

10 August 2017

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10 August 2017

PubMed publication ID

22174072

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