Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities (Q35821590)

10 August 2017

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities (English)

1 reference

International Space Station

10 August 2017

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author

Rolf Henrik Nilsson

8

1 reference

10 August 2017

Alexander J Probst

2

0 references

Kasthuri Venkateswaran

11

object named as

Kasthuri Venkateswaran

1 reference

10 August 2017

Aleksandra Checinska

1

1 reference

10 August 2017

Parag Vaishampayan

3

1 reference

10 August 2017

James R White

4

1 reference

10 August 2017

Deepika Kumar

5

1 reference

10 August 2017

Victor G Stepanov

6

1 reference

10 August 2017

George E Fox

7

1 reference

10 August 2017

Duane L Pierson

9

1 reference

10 August 2017

Jay Perry

10

1 reference

10 August 2017

language of work or name

English

0 references

publication date

27 October 2015

1 reference

10 August 2017

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10 August 2017

3

1 reference

10 August 2017

50

1 reference

describes a project that uses

10 August 2017

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

0 references

International Space Station Internal Environments

object has role

International Space Station experiment

1 reference

https://www.nasa.gov/mission_pages/station/research/experiments/explorer/Investigation.html?#id=1018

exact match

https://scigraph.springernature.com/pub.10.1186/s40168-015-0116-3

0 references

cites work

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A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

11 July 2018

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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

11 July 2018

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A combined approach to assess the microbial contamination of the archimedes palimpsest

11 July 2018

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Propionibacterium acnes: from commensal to opportunistic biofilm-associated implant pathogen

11 July 2018

1 reference

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Common contaminants in next-generation sequencing that hinder discovery of low-abundance microbes

11 July 2018

1 reference

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International Space Station environmental microbiome - microbial inventories of ISS filter debris

11 July 2018

1 reference

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A genetic inventory of spacecraft and associated surfaces

11 July 2018

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Towards a unified paradigm for sequence-based identification of fungi

11 July 2018

1 reference

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Studying the microbiology of the indoor environment

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

New perspectives on viable microbial communities in low-biomass cleanroom environments

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Next-generation sequencing of microbial communities in the Athabasca River and its tributaries in relation to oil sands mining activities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

The genus corynebacterium and other medically relevant coryneform-like bacteria

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Pyrosequencing-derived bacterial, archaeal, and fungal diversity of spacecraft hardware destined for Mars

11 July 2018

1 reference

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Structure, function and diversity of the healthy human microbiome

11 July 2018

1 reference

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Impact of Aspergillus fumigatus in allergic airway diseases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Advances in Aspergillus secondary metabolite research in the post-genomic era

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Using QIIME to analyze 16S rRNA gene sequences from microbial communities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Microbe-I: fungal biota analyses of the Japanese experimental module KIBO of the International Space Station before launch and after being in orbit for about 460 days.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

UCHIME improves sensitivity and speed of chimera detection

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Evaluation of procedures for the collection, processing, and analysis of biomolecules from low-biomass surfaces

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Characterization of a polyketide synthase in Aspergillus niger whose product is a precursor for both dihydroxynaphthalene (DHN) melanin and naphtho-γ-pyrone

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Transcriptional and proteomic responses of Pseudomonas aeruginosa PAO1 to spaceflight conditions involve Hfq regulation and reveal a role for oxygen

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Differential expression analysis for sequence count data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Search and clustering orders of magnitude faster than BLAST

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Can we use indoor fungi as bioindicators of indoor air quality? Historical perspectives and open questions.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

High-density 16S microarray and clone library-based microbial community composition of the Phoenix spacecraft assembly clean room

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

QIIME allows analysis of high-throughput community sequencing data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Comprehensive census of bacteria in clean rooms by using DNA microarray and cloning methods

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

The space-flight environment: the International Space Station and beyond

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

PCR-based method using propidium monoazide to distinguish viable from nonviable Bacillus subtilis spores

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Novel approaches toward preferential detection of viable cells using nucleic acid amplification techniques

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Effect of shadowing on survival of bacteria under conditions simulating the Martian atmosphere and UV radiation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Molecular bacterial community analysis of clean rooms where spacecraft are assembled

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Use of propidium monoazide for live/dead distinction in microbial ecology

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Isolation and characterization of bacteria capable of tolerating the extreme conditions of clean room environments

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Survey of environmental biocontamination on board the International Space Station.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Propionibacterium acnes types I and II represent phylogenetically distinct groups

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Microbial monitoring of spacecraft and associated environments

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Microbial characterization of the Mars Odyssey spacecraft and its encapsulation facility

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

On the safety of Aspergillus niger--a review.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Molecular microbial diversity of a spacecraft assembly facility

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

A greedy algorithm for aligning DNA sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus, B. thuringiensis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Correlation between the prevalence of certain fungi and sick building syndrome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Comparative levels and types of microbial contamination detected in industrial clean rooms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Comparison of microbial contamination levels among hospital operating rooms and industrial clean rooms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Discrimination between live and dead cellsin bacterial communities from environmental water samples analyzed by 454 pyrosequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

A comparison of the allergic responses induced by Penicillium chrysogenum and house dust mite extracts in a mouse model

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

The UNITE database for molecular identification of fungi--recent updates and future perspectives.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Mold species in dust from the International Space Station identified and quantified by mold-specific quantitative PCR.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Evidence of pathogenic microbes in the International Space Station drinking water: reason for concern?

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

gyrB as a phylogenetic discriminator for members of the Bacillus anthracis-cereus-thuringiensis group

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Microbial characterization during the early habitation of the International Space Station

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

ATP as a biomarker of viable microorganisms in clean-room facilities

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4624184

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS40168-015-0116-3

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0116-3

Microbiologic assay of space hardware

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26502721

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S40168-015-0116-3

1 reference

Dimensions Publication ID

10 August 2017

0 references

1 reference

10 August 2017

1 reference