Interpreting the host-pathogen dialogue through microarrays (Q35835081)

10 August 2017

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title

Interpreting the host-pathogen dialogue through microarrays (English)

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10 August 2017

2

Philip R Hardwidge

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10 August 2017

Brian K Coombes

1

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10 August 2017

B Brett Finlay

series ordinal

3

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10 August 2017

language of work or name

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1 January 2004

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Advances in Applied Microbiology

10 August 2017

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10 August 2017

54

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10 August 2017

291-331

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describes a project that uses

10 August 2017

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Characterization of mediators of microbial virulence and innate immunity using the Caenorhabditis elegans host-pathogen model

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7 January 2021

Cutting-edge technology. I. Global gene expression profiling using DNA microarrays

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7 January 2021

Global gene expression profiling in Escherichia coli K12. The effects of integration host factor

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7 January 2021

Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides.

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7 January 2021

Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon

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7 January 2021

High-sensitivity detection of DNA hybridization on microarrays using resonance light scattering

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7 January 2021

Toll-like receptors and their ligands.

1 reference

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7 January 2021

The transcriptional responses of respiratory epithelial cells to Bordetella pertussis reveal host defensive and pathogen counter-defensive strategies

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7 January 2021

Susceptibility to mycobacterial infections: the importance of host genetics

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7 January 2021

Genomic transcriptional profiling of the developmental cycle of Chlamydia trachomatis

1 reference

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7 January 2021

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

1 reference

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7 January 2021

Type III secretion systems: what is the translocator and what is translocated?

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7 January 2021

Type III secretion systems and bacterial flagella: insights into their function from structural similarities

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7 January 2021

Stereotyped and specific gene expression programs in human innate immune responses to bacteria

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7 January 2021

Genomic scale analysis of Pasteurella multocida gene expression during growth within the natural chicken host

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7 January 2021

Gene expression data analysis

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7 January 2021

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

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7 January 2021

Host-pathogen interactions: the attributes of virulence

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7 January 2021

Microbial virulence results from the interaction between host and microorganism

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7 January 2021

An essential role for NOD1 in host recognition of bacterial peptidoglycan containing diaminopimelic acid

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7 January 2021

Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar typhimurium DNA microarray

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7 January 2021

Post-analysis follow-up and validation of microarray experiments

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7 January 2021

Fundamentals of experimental design for cDNA microarrays

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7 January 2021

Monitoring cellular responses to Listeria monocytogenes with oligonucleotide arrays

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7 January 2021

Massive gene decay in the leprosy bacillus

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7 January 2021

Microarray expression profiling: capturing a genome-wide portrait of the transcriptome

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7 January 2021

cDNA array analysis of altered gene expression in human endothelial cells in response to Chlamydia pneumoniae infection

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7 January 2021

Chlamydia pneumoniae infection of endothelial cells induces transcriptional activation of platelet-derived growth factor-B: a potential link to intimal thickening in a rabbit model of atherosclerosis

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7 January 2021

Molecular and cell biology aspects of plague

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7 January 2021

The Yersinia Ysc-Yop 'type III' weaponry

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7 January 2021

Yersinia type III secretion: send in the effectors

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7 January 2021

Cellular microbiology emerging

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7 January 2021

Helicobacter pylori: after the genomes, back to biology

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7 January 2021

cDNA array analysis of cag pathogenicity island-associated Helicobacter pylori epithelial cell response genes

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7 January 2021

Statistical tests for differential expression in cDNA microarray experiments

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7 January 2021

Enteropathogenic Escherichia coli infection induces expression of the early growth response factor by activating mitogen-activated protein kinase cascades in epithelial cells.

1 reference

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7 January 2021

Host microarray analysis reveals a role for the Salmonella response regulator phoP in human macrophage cell death

1 reference

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7 January 2021

Comparing functional genomic datasets: lessons from DNA microarray analyses of host-pathogen interactions.

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7 January 2021

Transcriptome analysis of Neisseria meningitidis during infection

1 reference

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7 January 2021

Analysis by high density cDNA arrays of altered gene expression in human intestinal epithelial cells in response to infection with the invasive enteric bacteria Salmonella

1 reference

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7 January 2021

Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica

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7 January 2021

Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.

1 reference

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7 January 2021

Microarray analysis of global gene expression in mucoid Pseudomonas aeruginosa

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7 January 2021

Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes

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7 January 2021

Coupled two-way clustering analysis of gene microarray data

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7 January 2021

Nod1 detects a unique muropeptide from gram-negative bacterial peptidoglycan

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7 January 2021

Nod2 is a general sensor of peptidoglycan through muramyl dipeptide (MDP) detection

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7 January 2021

Inducible IL-2 production by dendritic cells revealed by global gene expression analysis.

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7 January 2021

The immune response is initiated by dendritic cells via interaction with microorganisms and interleukin-2 production.

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7 January 2021

Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae

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7 January 2021

Microbial pathogenesis and cytoskeletal function.

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7 January 2021

The global transcriptional response of Bacillus subtilis to manganese involves the MntR, Fur, TnrA and sigmaB regulons.

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7 January 2021

Correlation between protein and mRNA abundance in yeast

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7 January 2021

phoP/phoQ-deleted Salmonella typhi (Ty800) is a safe and immunogenic single-dose typhoid fever vaccine in volunteers.

1 reference

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7 January 2021

Options available--from start to finish--for obtaining data from DNA microarrays II.

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https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Commensal host-bacterial relationships in the gut

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7 January 2021

Molecular analysis of commensal host-microbial relationships in the intestine

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7 January 2021

Angiogenins: a new class of microbicidal proteins involved in innate immunity

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7 January 2021

Interaction of pseudomonas aeruginosa with epithelial cells: identification of differentially regulated genes by expression microarray analysis of human cDNAs

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7 January 2021

NODs: intracellular proteins involved in inflammation and apoptosis

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7 January 2021

Helicobacter pylori strain-specific differences in genetic content, identified by microarray, influence host inflammatory responses

1 reference

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7 January 2021

Redefining bacterial populations: a post-genomic reformation

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7 January 2021

Epithelial cells as sensors for microbial infection

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Comparative genomes of Chlamydia pneumoniae and C. trachomatis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Microarray analysis of pathogens and their interaction with hosts

1 reference

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7 January 2021

Improved analytical methods for microarray-based genome-composition analysis

1 reference

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7 January 2021

Pathogenic trickery: deception of host cell processes

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Expression of microbial virulence proteins in Saccharomyces cerevisiae models mammalian infection

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

YopM inhibits platelet aggregation and is necessary for virulence of Yersinia pestis in mice

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7 January 2021

Interfering with disease: opportunities and roadblocks to harnessing RNA interference

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7 January 2021

Pseudomonas-epithelial cell interactions dissected with DNA microarrays

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7 January 2021

Meningococcal genomics: two steps forward, one step back

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7 January 2021

Drug target validation and identification of secondary drug target effects using DNA microarrays

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7 January 2021

Toll-like receptors and innate immunity

1 reference

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7 January 2021

Host-induced epidemic spread of the cholera bacterium

1 reference

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7 January 2021

pH-regulated gene expression of the gastric pathogen Helicobacter pylori

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

A two-component regulatory system (phoP phoQ) controls Salmonella typhimurium virulence.

1 reference

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7 January 2021

Microarray transcription analysis of clinical Staphylococcus aureus isolates resistant to vancomycin

1 reference

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7 January 2021

Molecular regulation of urothelial renewal and host defenses during infection with uropathogenic Escherichia coli

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7 January 2021

Human macrophage activation programs induced by bacterial pathogens

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7 January 2021

Global Stage-Specific Gene Regulation during the Developmental Cycle of Chlamydia trachomatis

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7 January 2021

Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis

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7 January 2021

The invasive phenotype of Shigella flexneri directs a distinct gene expression pattern in the human intestinal epithelial cell line Caco-2.

1 reference

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7 January 2021

PhoP/PhoQ transcriptional repression of Salmonella typhimurium invasion genes: evidence for a role in protein secretion.

1 reference

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7 January 2021

Comparative genomics identifies the genetic islands that distinguish Neisseria meningitidis, the agent of cerebrospinal meningitis, from other Neisseria species

1 reference

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7 January 2021

Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis

1 reference

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7 January 2021

Microarray data normalization and transformation

1 reference

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7 January 2021

Pushing the limits of cellular microbiology: microarrays to study bacteria-host cell intimate contacts

1 reference

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7 January 2021

Genome-wide responses of a pathogenic bacterium to its host

1 reference

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7 January 2021

DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete

1 reference

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7 January 2021

Salmonella typhimurium infection and lipopolysaccharide stimulation induce similar changes in macrophage gene expression.

1 reference

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7 January 2021

Macrophages inhibit Salmonella typhimurium replication through MEK/ERK kinase and phagocyte NADPH oxidase activities

1 reference

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7 January 2021

Phagocyte sabotage: disruption of macrophage signalling by bacterial pathogens

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Regulation of mRNA expression in macrophages after Yersinia enterocolitica infection. Role of different Yop effectors.

1 reference

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7 January 2021

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Transcriptional Adaptation of Mycobacterium tuberculosis within Macrophages: Insights into the Phagosomal Environment

1 reference

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7 January 2021

Toll-like receptors control activation of adaptive immune responses

1 reference

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7 January 2021

Functional and comparative genomics of pathogenic bacteria

1 reference

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7 January 2021

An alpha-helical cationic antimicrobial peptide selectively modulates macrophage responses to lipopolysaccharide and directly alters macrophage gene expression

1 reference

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7 January 2021

Regulation of the Mycobacterium tuberculosis hypoxic response gene encoding α-crystallin

1 reference

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7 January 2021

Targeting of the Yersinia pestis YopM protein into HeLa cells and intracellular trafficking to the nucleus

1 reference

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7 January 2021

Sustained small interfering RNA-mediated human immunodeficiency virus type 1 inhibition in primary macrophages

1 reference

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7 January 2021

RNA interference targeting Fas protects mice from fulminant hepatitis

1 reference

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7 January 2021

mRNA expression profiles for Escherichia coli ingested by normal and phagocyte oxidase-deficient human neutrophils

1 reference

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7 January 2021

Microarray databases: standards and ontologies

1 reference

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7 January 2021

Gene expression profiling of Helicobacter pylori reveals a growth-phase-dependent switch in virulence gene expression.

1 reference

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7 January 2021

Nonparametric methods for identifying differentially expressed genes in microarray data

1 reference

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7 January 2021

Significance analysis of microarrays applied to the ionizing radiation response

1 reference

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7 January 2021

Modulation of inducible nitric oxide synthase expression by the attaching and effacing bacterial pathogen citrobacter rodentium in infected mice

1 reference

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7 January 2021

DNA microarrays in analysis of quorum sensing: strengths and limitations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Collective dynamics of 'small-world' networks

1 reference

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7 January 2021

Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosa

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Determination of the transcriptome of Vibrio cholerae during intraintestinal growth and midexponential phase in vitro

1 reference

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7 January 2021

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

1 reference

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7 January 2021

Design issues for cDNA microarray experiments

1 reference

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7 January 2021

Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis.

1 reference

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7 January 2021

The 16-kDa alpha-crystallin (Acr) protein of Mycobacterium tuberculosis is required for growth in macrophages

1 reference

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7 January 2021

Host-pathogen interactions: Host resistance factor Nramp1 up-regulates the expression of Salmonella pathogenicity island-2 virulence genes

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Mycobacterium tuberculosis signal transduction system required for persistent infections

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Molecular mechanisms regulating persistent Mycobacterium tuberculosis infection

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

Cellular gene expression altered by human cytomegalovirus: global monitoring with oligonucleotide arrays

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2164%2804%2954011-X

7 January 2021

10.1016/S0065-2164(04)54011-X

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