Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment (Q35844779)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26170900%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

title

Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment (English)

1 reference

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19 February 2020

0 references

1 reference

1

1 reference

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19 February 2020

Timothy K Starr

3

1 reference

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19 February 2020

Ran Blekhman

5

1 reference

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19 February 2020

author name string

Joshua Lynch

2

1 reference

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19 February 2020

Dan Knights

4

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19 February 2020

publication date

24 June 2015

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19 February 2020

1 reference

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19 February 2020

volume

7

1 reference

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19 February 2020

issue

1

1 reference

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19 February 2020

page(s)

55

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Creative Commons Attribution 4.0 International

19 February 2020

copyright license

start time

24 June 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Potential of fecal microbiota for early-stage detection of colorectal cancer

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11 July 2018

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11 July 2018

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Microbial mucosal colonic shifts associated with the development of colorectal cancer reveal the presence of different bacterial and archaeal biomarkers

11 July 2018

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The multifaceted role of the intestinal microbiota in colon cancer

11 July 2018

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Co-occurrence of anaerobic bacteria in colorectal carcinomas.

11 July 2018

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Fusobacterium in colonic flora and molecular features of colorectal carcinoma.

11 July 2018

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Diet rapidly and reproducibly alters the human gut microbiome

11 July 2018

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Human gut microbiome and risk for colorectal cancer

11 July 2018

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Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut

11 July 2018

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Data, information, knowledge and principle: back to metabolism in KEGG

11 July 2018

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Advancing our understanding of the human microbiome using QIIME

11 July 2018

1 reference

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Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome

11 July 2018

1 reference

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

11 July 2018

1 reference

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Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/β-catenin signaling via its FadA adhesin

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Screening metatranscriptomes for toxin genes as functional drivers of human colorectal cancer.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Dysbiosis signature of fecal microbiota in colorectal cancer patients

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Providencia alcalifaciens causes barrier dysfunction and apoptosis in tissue cell culture: potent role of lipopolysaccharides on diarrheagenicity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Diversified pattern of the human colorectal cancer microbiome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

APOBEC3B is an enzymatic source of mutation in breast cancer.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Biased diversity metrics revealed by bacterial 16S pyrotags derived from different primer sets

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Changes of the intestinal microbiota, short chain fatty acids, and fecal pH in patients with colorectal cancer

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Comparative genomics of bacteria in the genus Providencia isolated from wild Drosophila melanogaster

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Inferring correlation networks from genomic survey data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Intestinal inflammation targets cancer-inducing activity of the microbiota.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Comprehensive molecular characterization of human colon and rectal cancer

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Structure, function and diversity of the healthy human microbiome

11 July 2018

1 reference

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Molecular characterizations of cytolethal distending toxin produced by Providencia alcalifaciens strains isolated from patients with diarrhea.

11 July 2018

1 reference

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Fusobacterium nucleatum: an emerging gut pathogen?

11 July 2018

1 reference

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Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Towards the human colorectal cancer microbiome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Mechanical disruption of lysis-resistant bacterial cells by use of a miniature, low-power, disposable device

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Microbial dysbiosis in colorectal cancer (CRC) patients

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

11 July 2018

Global cancer statistics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Luminal and mucosal-associated intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Search and clustering orders of magnitude faster than BLAST

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Cytoscape Web: an interactive web-based network browser

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

QIIME allows analysis of high-throughput community sequencing data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

MvirDB--a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Ocular infections caused by Providencia rettgeri

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Trends in production of extended-spectrum beta-lactamases among enterobacteria of medical interest: report of the second Italian nationwide survey

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Resistance rates to commonly used antimicrobials among pathogens of both bacteremic and non-bacteremic community-acquired urinary tract infection

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

A large outbreak of foodborne infection attributed to Providencia alcalifaciens

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

A new mathematical model for relative quantification in real-time RT-PCR

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Oral microbial communities: biofilms, interactions, and genetic systems

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

KEGG: kyoto encyclopedia of genes and genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Short chain fatty acid distributions of enema samples from a sigmoidoscopy population: an association of high acetate and low butyrate ratios with adenomatous polyps and colon cancer

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Pathogenesis of Providencia alcalifaciens-induced diarrhea

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Colonization of the human gut by E. coli and colorectal cancer risk

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Functional genomic analyses of the gut microbiota for CRC screening.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Prevalence of Providencia strains among children with diarrhea in Japan.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

Importance of Providencia species as a major cause of travellers' diarrhoea.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4499914

The relationship between Fusobacterium species and other flora in mixed infection

24 September 2018

1 reference

12 December 2020

Extraction and characterization of the smooth-type lipopolysaccharide from Fusobacterium nucleatum JCM 8532 and its biological activities

1 reference

12 December 2020

Prevalence of invasive ability and other virulence-associated characteristics in Providencia alcalifaciens strains isolated in São Paulo, Brazil

1 reference

12 December 2020

Multidrug-resistant Providencia isolates carrying blaPER-1, blaVIM-2, and armA

1 reference

12 December 2020

Periodontal pathogens: a quantitative comparison of anaerobic culture and real-time PCR

1 reference

12 December 2020

Etiologic role of bacteria of the genus Providencia in acute intestinal diseases

1 reference

12 December 2020

10.1186/S13073-015-0177-8

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26170900%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

19 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26170900%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

PubMed publication ID

26170900

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26170900%20AND%20SRC:MED&resulttype=core&format=json