Wham: Identifying Structural Variants of Biological Consequence (Q35857315)

10 August 2017

Wham: Identifying Structural Variants of Biological Consequence (English)

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10 August 2017

Zev N Kronenberg

1

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author name string

Edward J Osborne

2

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10 August 2017

Kelsey R Cone

3

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10 August 2017

Brett J Kennedy

4

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10 August 2017

Eric T Domyan

5

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10 August 2017

Michael D Shapiro

6

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10 August 2017

Nels C Elde

7

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10 August 2017

Mark Yandell

8

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10 August 2017

1 December 2015

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PLOS Computational Biology

10 August 2017

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10 August 2017

11

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10 August 2017

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10 August 2017

e1004572

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Creative Commons Attribution 4.0 International

10 August 2017

start time

1 December 2015

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

scikit-learn

object named as

scikit-learn

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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27 July 2018

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27 July 2018

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Duplication of the A17L locus of vaccinia virus provides an alternate route to rifampin resistance

27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Phenotypic impact of genomic structural variation: insights from and for human disease

27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Challenges in studying genomic structural variant formation mechanisms: the short-read dilemma and beyond

27 July 2018

1 reference

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

1 reference

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

1 reference

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Structural variation in the human genome and its role in disease

27 July 2018

1 reference

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Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

27 July 2018

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27 July 2018

1 reference

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Upcoming challenges for multiple sequence alignment methods in the high-throughput era

27 July 2018

1 reference

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Bacterial gene amplification: implications for the evolution of antibiotic resistance

27 July 2018

1 reference

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Copy number variation and evolution in humans and chimpanzees

27 July 2018

1 reference

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Mapping and sequencing of structural variation from eight human genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

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27 July 2018

1 reference

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27 July 2018

1 reference

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Copy-number variation and association studies of human disease

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

TASSEL: software for association mapping of complex traits in diverse samples

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

An initial map of insertion and deletion (INDEL) variation in the human genome.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

Gene amplification and genomic plasticity in prokaryotes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

Reversal of the interferon-sensitive phenotype of a vaccinia virus lacking E3L by expression of the reovirus S4 gene.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

Amplification of the ribonucleotide reductase small subunit gene: analysis of novel joints and the mechanism of gene duplication in vaccinia virus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

Accurate de novo and transmitted indel detection in exome-capture data using microassembly

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

LUMPY: a probabilistic framework for structural variant discovery.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

Copy number change: evolving views on gene amplification.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

An integrative probabilistic model for identification of structural variation in sequencing data

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

Design of association studies with pooled or un-pooled next-generation sequencing data

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

Gene amplification and adaptive evolution in bacteria.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666669

10.1371/JOURNAL.PCBI.1004572

24 September 2018

Identifiers

DOI

1 reference

journals/ploscb/KronenbergOCKDS15

10 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

0 references

1 reference

10 August 2017

PubMed publication ID

26625158

1 reference