Complete nucleotide sequence and transcriptional analysis of snakehead fish retrovirus (Q35861255)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8648695%20AND%20SRC:MED&resulttype=core&format=json

16 October 2019

title

Complete nucleotide sequence and transcriptional analysis of snakehead fish retrovirus (English)

1 reference

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16 October 2019

author name string

Hart D

1

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16 October 2019

Frerichs GN

2

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16 October 2019

Rambaut A

3

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16 October 2019

Onions DE

4

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16 October 2019

language of work or name

English

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publication date

1 June 1996

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16 October 2019

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16 October 2019

volume

70

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16 October 2019

issue

6

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16 October 2019

page(s)

3606-3616

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Analysis of multiple mRNAs from pathogenic equine infectious anemia virus (EIAV) in an acutely infected horse reveals a novel protein, Ttm, derived from the carboxy terminus of the EIAV transmembrane protein.

16 October 2019

cites work

1 reference

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Translation of equine infectious anemia virus bicistronic tat-rev mRNA requires leaky ribosome scanning of the tat CTG initiation codon

11 July 2018

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The structure and function of proline-rich regions in proteins

11 July 2018

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The unusual nucleotide content of the HIV RNA genome results in a biased amino acid composition of HIV proteins

11 July 2018

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Identification of a membrane-binding domain within the amino-terminal region of human immunodeficiency virus type 1 Gag protein which interacts with acidic phospholipids

11 July 2018

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An assembly domain of the Rous sarcoma virus Gag protein required late in budding

11 July 2018

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Pseudoknot-dependent read-through of retroviral gag termination codons: importance of sequences in the spacer and loop 2

11 July 2018

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

11 July 2018

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Conserved framework of envelope glycoproteins among lentiviruses

11 July 2018

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An internal ribosomal entry mechanism promotes translation of murine leukemia virus gag polyprotein precursors.

11 July 2018

1 reference

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The tendency of lentiviral open reading frames to become A-rich: constraints imposed by viral genome organization and cellular tRNA availability

11 July 2018

1 reference

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Positionally independent and exchangeable late budding functions of the Rous sarcoma virus and human immunodeficiency virus Gag proteins

11 July 2018

1 reference

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Nucleotide sequence and protein analysis of a complex piscine retrovirus, walleye dermal sarcoma virus

11 July 2018

1 reference

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Ribosomal frameshifting viral RNAs.

11 July 2018

1 reference

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p6Gag is required for particle production from full-length human immunodeficiency virus type 1 molecular clones expressing protease

11 July 2018

1 reference

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Coiled-coils in alpha-helix-containing proteins: analysis of the residue types within the heptad repeat and the use of these data in the prediction of coiled-coils in other proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Murine leukemia virus protease is encoded by the gag-pol gene and is synthesized through suppression of an amber termination codon

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

A new method for predicting signal sequence cleavage sites

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Effects of intercistronic length on the efficiency of reinitiation by eucaryotic ribosomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

11 July 2018

1 reference

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

11 July 2018

1 reference

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A simple salting out procedure for extracting DNA from human nucleated cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

A general model for the transmembrane proteins of HIV and other retroviruses

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

The scanning model for translation: an update

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Origins and evolutionary relationships of retroviruses

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Sequence comparisons of retroviral proteins: relative rates of change and general phylogeny

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Computer analysis of retroviral pol genes: assignment of enzymatic functions to specific sequences and homologies with nonviral enzymes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Nucleotide sequence and transcriptional analysis of molecular clones of CAEV which generate infectious virus

11 July 2018

1 reference

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Translational suppression in gene expression in retroviruses and retrotransposons.

11 July 2018

1 reference

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Protein sequence comparisons show that the 'pseudoproteases' encoded by poxviruses and certain retroviruses belong to the deoxyuridine triphosphatase family

11 July 2018

1 reference

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Cloning and characterization of cDNAs encoding equine infectious anemia virus tat and putative Rev proteins.

11 July 2018

1 reference

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Identification of sequences encoding the equine infectious anemia virus tat gene

11 July 2018

1 reference

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Equine infectious anemia virus tat: insights into the structure, function, and evolution of lentivirus trans-activator proteins

11 July 2018

1 reference

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SIGNAL SCAN: a computer program that scans DNA sequences for eukaryotic transcriptional elements

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Predicting coiled coils from protein sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Effect of mutations affecting the p6 gag protein on human immunodeficiency virus particle release

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Two interdependent basic domains in nucleoplasmin nuclear targeting sequence: identification of a class of bipartite nuclear targeting sequence

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Evidence that a downstream pseudoknot is required for translational read-through of the Moloney murine leukemia virus gag stop codon

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Spontaneously productive C-type retrovirus infection of fish cell lines

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Human immunodeficiency virus reverse transcriptase ribonuclease H: specificity of tRNALys3-primer excision

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Origin and evolution of retroelements based upon their reverse transcriptase sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Nuclear targeting sequences--a consensus?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Bipartite signal for read-through suppression in murine leukemia virus mRNA: an eight-nucleotide purine-rich sequence immediately downstream of the gag termination codon followed by an RNA pseudoknot

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Amino acid substitution matrices from protein blocks

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Incomplete removal of the RNA primer for minus-strand DNA synthesis by human immunodeficiency virus type 1 reverse transcriptase

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Distinct subsets of retroviruses encode dUTPase

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

DNA sequencing with chain-terminating inhibitors

11 July 2018

1 reference

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Nucleotide composition as a driving force in the evolution of retroviruses.

11 July 2018

1 reference

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Nucleotide sequence of Rous sarcoma virus

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190236

Codon usage in bony fishes

6 December 2018

1 reference

12 December 2020

A major retroviral core protein related to EPA and TIMP

1 reference

12 December 2020

Structural alignment of retroviral protease sequences

1 reference

12 December 2020

Form, function, and use of retroviral gag proteins

1 reference

12 December 2020

Identifiers

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8648695%20AND%20SRC:MED&resulttype=core&format=json

16 October 2019

1 reference