A new approach to bias correction in RNA-Seq (Q35861626)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22285831%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

A new approach to bias correction in RNA-Seq (English)

1 reference

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21 January 2020

1 reference

1 reference

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2

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21 January 2020

4

Michael G Katze

1 reference

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21 January 2020

author name string

Daniel C Jones

series ordinal

1

1 reference

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21 January 2020

Xinxia Peng

series ordinal

3

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21 January 2020

language of work or name

English

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publication date

28 January 2012

1 reference

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21 January 2020

number of pages

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

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21 January 2020

volume

28

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21 January 2020

issue

7

1 reference

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21 January 2020

page(s)

921-928

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Creative Commons Attribution-NonCommercial 3.0 Unported

21 January 2020

copyright license

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing.

1 reference

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Bias detection and correction in RNA-Sequencing data

11 July 2018

1 reference

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Improving RNA-Seq expression estimates by correcting for fragment bias

11 July 2018

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A two-parameter generalized Poisson model to improve the analysis of RNA-seq data

11 July 2018

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Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing

11 July 2018

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Modeling non-uniformity in short-read rates in RNA-Seq data

11 July 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

11 July 2018

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Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.

11 July 2018

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

FRT-seq: amplification-free, strand-specific transcriptome sequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

11 July 2018

1 reference

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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

11 July 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

11 July 2018

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The UCSC Genome Browser Database: 2008 update

11 July 2018

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees

11 July 2018

1 reference

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Identification of transcription factor binding sites with variable-order Bayesian networks

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

Multiple additive regression trees with application in epidemiology

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

A multiple-feature framework for modelling and predicting transcription factor binding sites.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

Prediction of splice sites with dependency graphs and their expanded bayesian networks

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

Modeling splice sites with Bayes networks.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315719

10.1093/BIOINFORMATICS/BTS055

24 September 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22285831%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/JonesRPK12

21 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22285831%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

22285831

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22285831%20AND%20SRC:MED&resulttype=core&format=json