Thermodynamics of protein-ligand interactions: history, presence, and future aspects (Q35877480)

10 August 2017

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title

Thermodynamics of protein-ligand interactions: history, presence, and future aspects (English)

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10 August 2017

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3

Leonardo Scapozza

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10 August 2017

Remo Perozzo

1

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PubMed ID

15344878

10 August 2017

Gerd Folkers

series ordinal

2

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10 August 2017

1 February 2004

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Journal of Receptors and Signal Transduction

10 August 2017

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10 August 2017

24

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10 August 2017

1-52

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10 August 2017

1-2

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Scanning microcalorimetry in studying temperature-induced changes in proteins.

10 August 2017

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Thermodynamic problems of protein structure.

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Rapid measurement of binding constants and heats of binding using a new titration calorimeter

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Calorimetric determination of cooperative interactions in high affinity binding processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Thermodynamic studies of myristoyl-CoA: protein N-myristoyltransferase using isothermal titration calorimetry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Sensitive titration microcalorimetric study of the binding of Salmonella O-antigenic oligosaccharides by a monoclonal antibody

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Determination of accurate thermodynamics of binding by titration microcalorimetry

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Thermodynamic evaluation of binding interactions in the methionine repressor system of Escherichia coli using isothermal titration calorimetry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Apparent heat capacity change accompanying a nonspecific protein-DNA interaction. Escherichia coli SSB tetramer binding to oligodeoxyadenylates

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Tight ligand binding affinities determined from thermodynamic linkage to temperature by titration calorimetry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Thermodynamic studies of the interaction of trp aporepressor with tryptophan analogs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Thermodynamics of inhibitor binding to the catalytic site of glucoamylase from Aspergillus niger determined by displacement titration calorimetry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Exact analysis of competition ligand binding by displacement isothermal titration calorimetry.

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Atomic solvation parameters in the analysis of protein-protein docking results

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Calculation of the free energy of association for protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Affinity and specificity of serine endopeptidase-protein inhibitor interactions. Empirical free energy calculations based on X-ray crystallographic structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Toward an estimation of binding constants in aqueous solution: studies of associations of vancomycin group antibiotics

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Enthalpy-entropy compensation and heat capacity changes for protein-ligand interactions: general thermodynamic models and data for the binding of nucleotides to ribonuclease A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Enthalpy-entropy compensation phenomena in water solutions of proteins and small molecules: A ubiquitous properly of water

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Just add water! The effect of water on the specificity of protein-ligand binding sites and its potential application to drug design

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The entropic penalty of ordered water accounts for weaker binding of the antibiotic novobiocin to a resistant mutant of DNA gyrase: a thermodynamic and crystallographic study

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Bound water molecules and conformational stabilization help mediate an antigen-antibody association

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Involvement of water molecules in the association of monoclonal antibody HyHEL-5 with bobwhite quail lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Responses of two protein-protein complexes to solvent stress: does water play a role at the interface?

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Molecular recognition mediated by bound water. A mechanism for star activity of the restriction endonuclease EcoRI

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Structural and mutational analysis of affinity-inert contact residues at the growth hormone-receptor interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Enthalpy of hydrogen bond formation in a protein-ligand binding reaction

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Decomposition of the Free Energy of a System in Terms of Specific Interactions

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

Decomposition of interaction free energies in proteins and other complex systems.

21 January 2018

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https://api.crossref.org/works/10.1081%2FRRS-120037896

The meaning of component analysis: decomposition of the free energy in terms of specific interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Structural energetics of peptide recognition: Angiotensin II/antibody binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Entropy in biological binding processes: estimation of translational entropy loss.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Isothermal titration calorimetry and differential scanning calorimetry as complementary tools to investigate the energetics of biomolecular recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Molecular basis of co-operativity in protein folding. III. Structural identification of cooperative folding units and folding intermediates

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Prediction of binding energetics from structure using empirical parameterization

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Structure-based prediction of binding affinities and molecular design of peptide ligands.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Win some, lose some: enthalpy-entropy compensation in weak intermolecular interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Contribution of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Hydrophobic effect in protein folding and other noncovalent processes involving proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The interpretation of protein structures: Estimation of static accessibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Structural parameterization of the binding enthalpy of small ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Solid model compounds and the thermodynamics of protein unfolding

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Temperature dependence of the hydrophobic interaction in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The entropy cost of protein association.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Some factors in the interpretation of protein denaturation

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The statistical-thermodynamic basis for computation of binding affinities: a critical review

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The "cratic correction" and related fallacies

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Side-chain entropy opposes alpha-helix formation but rationalizes experimentally determined helix-forming propensities

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The three-dimensional structure of thymidine kinase from herpes simplex virus type 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The structures of thymidine kinase from herpes simplex virus type 1 in complex with substrates and a substrate analogue

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Exploring the active site of herpes simplex virus type-1 thymidine kinase by X-ray crystallography of complexes with aciclovir and other ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Crystal structures of the thymidine kinase from herpes simplex virus type-1 in complex with deoxythymidine and ganciclovir

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Structure to 1.9 A resolution of a complex with herpes simplex virus type-1 thymidine kinase of a novel, non-substrate inhibitor: X-ray crystallographic comparison with binding of aciclovir

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Compulsory order of substrate binding to herpes simplex virus type 1 thymidine kinase. A calorimetric study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Substrate diversity of herpes simplex virus thymidine kinase. Impact Of the kinematics of the enzyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Structure of a mutant adenylate kinase ligated with an ATP-analogue showing domain closure over ATP

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Two-component signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Regulation of anaerobic citrate metabolism in Klebsiella pneumoniae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Chelation of divalent cations by ATP, studied by titration calorimetry

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Crystallographic refinement and atomic models of two different forms of citrate synthase at 2.7 and 1.7 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The crystal structure of citrate synthase from the hyperthermophilic archaeon pyrococcus furiosus at 1.9 A resolution,

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Identification of basic amino acid residues important for citrate binding by the periplasmic receptor domain of the sensor kinase CitA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The structure of the periplasmic ligand-binding domain of the sensor kinase CitA reveals the first extracellular PAS domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The serine receptor of bacterial chemotaxis exhibits half-site saturation for serine binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Probing the sensory rhodopsin II binding domain of its cognate transducer by calorimetry and electrophysiology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Variations on a molecular switch: transport and sensory signalling by archaeal rhodopsins

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Structural insights into the early steps of receptor-transducer signal transfer in archaeal phototaxis

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

Probing stability of helical transmembrane proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

The ice calorimeter of Lavoisier and Laplace and some of its critics

21 January 2018

1 reference

https://api.crossref.org/works/10.1081%2FRRS-120037896

21 January 2018

Identifiers

DOI

10.1081/RRS-120037896

1 reference

10 August 2017

1 reference

PubMed ID

15344878