Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata (Q35882154)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22431508%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

title

Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata (English)

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26 January 2020

0 references

0 references

2

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26 January 2020

author name string

Sayuri Tsukahara

1

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26 January 2020

Akie Kobayashi

3

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26 January 2020

Tasuku Ito

4

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26 January 2020

Tomoyuki Aizu

5

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26 January 2020

Tadasu Shin-i

6

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26 January 2020

Atsushi Toyoda

7

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26 January 2020

Asao Fujiyama

8

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26 January 2020

Yoshiaki Tarutani

9

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26 January 2020

Tetsuji Kakutani

10

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26 January 2020

publication date

19 March 2012

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26 January 2020

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26 January 2020

volume

26

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26 January 2020

issue

7

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26 January 2020

page(s)

705-713

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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

26 January 2020

cites work

1 reference

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11 July 2018

1 reference

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The epigenetic control of the Athila family of retrotransposons in Arabidopsis

11 July 2018

1 reference

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Centromeres: long intergenic spaces with adaptive features

11 July 2018

1 reference

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Chromodomains direct integration of retrotransposons to heterochromatin.

11 July 2018

1 reference

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Distribution dynamics of the Tnt1 retrotransposon in tobacco

11 July 2018

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Construction and behavior of engineered minichromosomes in maize

11 July 2018

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Heterochromatin revisited

11 July 2018

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Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution

11 July 2018

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Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

11 July 2018

1 reference

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Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Retrotransposon accumulation and satellite amplification mediated by segmental duplication facilitate centromere expansion in rice

11 July 2018

1 reference

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Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice

11 July 2018

1 reference

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Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae

11 July 2018

1 reference

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Plant neocentromeres: fast, focused, and driven

11 July 2018

1 reference

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Role of transposable elements in heterochromatin and epigenetic control

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Targeting survival: integration site selection by retroviruses and LTR-retrotransposons

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Tandemly repeated DNA sequences and centromeric chromosomal regions of Arabidopsis species.

11 July 2018

1 reference

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DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Conflict begets complexity: the evolution of centromeres

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Endogenous targets of transcriptional gene silencing in Arabidopsis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Transposon diversity in Arabidopsis thaliana

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

11 July 2018

1 reference

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Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana

11 July 2018

1 reference

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The paleontology of intergene retrotransposons of maize

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Developmental abnormalities and epimutations associated with DNA hypomethylation mutations

11 July 2018

1 reference

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Nested retrotransposons in the intergenic regions of the maize genome

11 July 2018

1 reference

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Retrotransposons of rice involved in mutations induced by tissue culture

11 July 2018

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Athila, a new retroelement from Arabidopsis thaliana

11 July 2018

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Selfish DNA: a sexually-transmitted nuclear parasite

11 July 2018

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Integration specificity of retrotransposons and retroviruses

11 July 2018

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Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

11 July 2018

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Selective epigenetic control of retrotransposition in Arabidopsis.

24 September 2018

1 reference

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Bursts of retrotransposition reproduced in Arabidopsis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Structure and genomic organization of centromeric repeats in Arabidopsis species.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Physical map-based sizes of the centromeric regions of Arabidopsis thaliana chromosomes 1, 2, and 3.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3323881

The rice retrotransposon Tos17 prefers low-copy-number sequences as integration targets

24 September 2018

1 reference

12 December 2020

Efficient insertion mutagenesis of Arabidopsis by tissue culture-induced activation of the tobacco retrotransposon Tto1

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12 December 2020

Arabidopsis thaliana DNA methylation mutants

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12 December 2020

Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation

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12 December 2020

Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes

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12 December 2020

Identifiers

DOI

10.1101/GAD.183871.111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22431508%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22431508%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22431508%20AND%20SRC:MED&resulttype=core&format=json