Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas (Q35885804)

10 August 2017

Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas (English)

1 reference

10 August 2017

1 reference

1 reference

5

Mehrdad Hajibabaei

1 reference

10 August 2017

1

Teresita M Porter

1 reference

10 August 2017

2

Shadi Shokralla

1 reference

10 August 2017

Donald Baird

3

1 reference

10 August 2017

G Brian Golding

series ordinal

4

1 reference

10 August 2017

language of work or name

English

0 references

publication date

5 January 2016

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10 August 2017

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10 August 2017

11

1 reference

10 August 2017

1

1 reference

10 August 2017

e0142759

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Creative Commons Attribution 4.0 International

10 August 2017

start time

5 January 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Where are all the undocumented fungal species? A study of Mortierella demonstrates the need for sequence-based classification

27 July 2018

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27 July 2018

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Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences

27 July 2018

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Spatial patterns of plant diversity below-ground as revealed by DNA barcoding

27 July 2018

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Rhizopogon spore bank communities within and among California pine forests

27 July 2018

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Vertical distribution of fungal communities in tallgrass prairie soil.

27 July 2018

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454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

27 July 2018

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ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

27 July 2018

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A DNA barcode for land plants

27 July 2018

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The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

27 July 2018

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A bioinformatician's guide to metagenomics

27 July 2018

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Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil

27 July 2018

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A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region

27 July 2018

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Diversity of basidiomycetes in michigan agricultural soils

27 July 2018

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Microbial diversity in the deep sea and the underexplored "rare biosphere"

27 July 2018

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Land plants and DNA barcodes: short-term and long-term goals

27 July 2018

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Fungal community analysis by large-scale sequencing of environmental samples

27 July 2018

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Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi

27 July 2018

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27 July 2018

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Environmental genome shotgun sequencing of the Sargasso Sea

27 July 2018

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Experience with the MicroSeq D2 Large-Subunit Ribosomal DNA Sequencing Kit for Identification of Commonly Encountered, Clinically Important Yeast Species

27 July 2018

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Seasonal dynamics of previously unknown fungal lineages in tundra soils.

27 July 2018

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The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy

27 July 2018

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Phylogenetic Relationships of Agaric Fungi Based on Nuclear Large Subunit Ribosomal DNA Sequences

27 July 2018

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27 July 2018

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One Hundred and Seventeen Clades of Euagarics

21 January 2018

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The molecular revolution in ectomycorrhizal ecology: peeking into the black-box.

27 July 2018

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Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning

27 July 2018

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A universal molecular method for identifying underground plant parts to species

27 July 2018

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Ecosystem rooting depth determined with caves and DNA

27 July 2018

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Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences

27 July 2018

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Bias in template-to-product ratios in multitemplate PCR

27 July 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

27 July 2018

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Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712138

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712138

Chloroplast gene sequences and the study of plant evolution

27 July 2018

1 reference

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ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712138

Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712138

Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data

24 September 2018

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An open source chimera checker for the fungal ITS region

24 September 2018

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Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics.

24 September 2018

1 reference

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Comparison of multiple metagenomes using phylogenetic networks based on ecological indices.

24 September 2018

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The UNITE database for molecular identification of fungi--recent updates and future perspectives

24 September 2018

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Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712138

Inoculum potential of Rhizopogon spores increases with time over the first 4 yr of a 99-yr spore burial experiment

24 September 2018

1 reference

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Fruiting body and soil rDNA sampling detects complementary assemblage of Agaricomycotina (Basidiomycota, Fungi) in a hemlock-dominated forest plot in southern Ontario.

24 September 2018

1 reference

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Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland

24 September 2018

1 reference

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MEGAN analysis of metagenomic data

24 September 2018

1 reference

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Can rDNA analyses of diverse fungal communities in soil and roots detect effects of environmental manipulations--a case study from tallgrass prairie.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712138

UniFrac: a new phylogenetic method for comparing microbial communities

24 September 2018

1 reference

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Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

24 September 2018

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DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach

21 January 2018

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An Ordination of the Upland Forest Communities of Southern Wisconsin

21 January 2018

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The fungal dimension of biodiversity: magnitude, significance, and conservation

21 January 2018

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Impacts of naturally-occurring soil fungi on seeds of meadow plants

21 January 2018

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An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

21 January 2018

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Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences

21 January 2018

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Improving ITS sequence data for identification of plant pathogenic fungi

21 January 2018

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Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity

21 January 2018

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Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26731732

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26731732

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0142759

1 reference

release_idulqikghbafxosng4j4s7m5oe

10 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/idulqikghbafxosng4j4s7m5oe

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

10 August 2017

PubMed publication ID

26731732

1 reference