Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses (Q35918719)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

title

Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Bridget Carragher

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

author name string

A-C Baudoux

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

R W Hendrix

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

X Bailly

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

S Podell

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

C Paillard

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

J E Johnson

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

C S Potter

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

F Azam

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

publication date

9 January 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

Environmental Microbiology

19 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

page(s)

2071-2086

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

maintained by WikiProject

19 January 2020

1 reference

Marine viruses and global climate change

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Mobile regulatory cassettes mediate modular shuffling in T4-type phage genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Analysis of high-throughput sequencing and annotation strategies for phage genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Genomic analysis of multiple Roseophage SIO1 strains

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Vibrios as causal agents of zoonoses

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

The genome of Bacillus subtilis bacteriophage SPO1

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Marine viruses--major players in the global ecosystem

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Virus decay and its causes in coastal waters

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Unstable lysogeny and pseudolysogeny in Vibrio harveyi siphovirus-like phage 1.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Mechanisms and rates of decay of marine viruses in seawater.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Antagonistic interactions among marine bacteria impede the proliferation of Vibrio cholerae

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Marine phage genomics: what have we learned?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Here a virus, there a virus, everywhere the same virus?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Complete genome sequence of phiHSIC, a pseudotemperate marine phage of Listonella pelagia

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Genomic analysis of bacteriophage PhiJL001: insights into its interaction with a sponge-associated alpha-proteobacterium

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Complete genome sequence of bacteriophage T5.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Conserved translational frameshift in dsDNA bacteriophage tail assembly genes.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

27 July 2018

Biodiversity of vibrios

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Origins of highly mosaic mycobacteriophage genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

27 July 2018

Global phage diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Phages of the marine cyanobacterial picophytoplankton

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Improved microbial gene identification with GLIMMER

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Marine viruses and their biogeochemical and ecological effects

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Analyzing genomes with cumulative skew diagrams

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

27 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

27 July 2018

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Effects of sunlight on bacteriophage viability and structure

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Posttranscriptional regulatory mechanisms in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

The marine viromes of four oceanic regions

27 July 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Vibrio harveyi: a significant pathogen of marine vertebrates and invertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Causes for the intriguing presence of tRNAs in phages

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Characterization of different viruses infecting the marine harmful algal bloom species Phaeocystis globosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Genetic richness of vibriophages isolated in a coastal environment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Protein cleavage in bacteriophage lambda tail assembly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Vibrio shiloi sp. nov., the causative agent of bleaching of the coral Oculina patagonica

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Genetic control of capsid length in bacteriophage T4. VII. A model of length regulation based on DNA size

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Transfer of photosynthesis genes to and from Prochlorococcus viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Antagonistic interactions among marine pelagic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Virus attachment to transparent exopolymeric particles along trophic gradients in the southwestern lagoon of New Caledonia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Unfolding thermodynamics of the Delta-domain in the prohead I subunit of phage HK97: determination by factor analysis of Raman spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Partial characterization of a novel bacteriophage of Vibrio harveyi isolated from shrimp culture ponds in Thailand

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Genome sequencing in microfabricated high-density picolitre reactors

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338904

Distribution, genetic richness and phage sensitivity ofVibriospp. from coastal British Columbia

24 September 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Temporal variability in dissolved phosphorus concentrations in the subtropical North Pacific Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Bacterial mediation of carbon fluxes during a diatom bloom in a mesocosm

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Determination of bacteriophage λ tail length by a protein ruler

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02685.X

Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery

21 January 2018

1 reference

12 December 2020

Nature of Phosphorus Limitation in the Ultraoligotrophic Eastern Mediterranean

1 reference

12 December 2020

The cycle for a Siphoviridae-like phage (VHS1) of Vibrio harveyi is dependent on the physiological state of the host

1 reference

12 December 2020

Comments on the arrangement of the morphogenetic genes of bacteriophage lambda

1 reference

12 December 2020

10.1111/J.1462-2920.2011.02685.X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22225728%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference