Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapes (Q35961701)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21078392%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapes (English)

1 reference

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16 January 2020

3

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16 January 2020

author name string

Stefan Birmanns

series ordinal

1

1 reference

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16 January 2020

Mirabela Rusu

series ordinal

2

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16 January 2020

publication date

13 November 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21078392%20AND%20SRC:MED&resulttype=core&format=json

Journal of Structural Biology

16 January 2020

published in

1 reference

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16 January 2020

volume

173

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16 January 2020

page(s)

428-435

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16 January 2020

issue

3

1 reference

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Using Situs for the integration of multi-resolution structures

16 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Evolutionary tabu search strategies for the simultaneous registration of multiple atomic structures in cryo-EM reconstructions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Biomolecular pleiomorphism probed by spatial interpolation of coarse models.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Visualization software for molecular assemblies

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Crystal structures of actin-related protein 2/3 complex with bound ATP or ADP.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

UCSF Chimera--a visualization system for exploratory research and analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

New electron microscopy database and deposition system

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

2 October 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Single-particle imaging of macromolecules by cryo-electron microscopy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

ATP-bound states of GroEL captured by cryo-electron microscopy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Structure of human erythrocyte catalase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Low-resolution density maps from atomic models: how stepping "back" can be a step "forward".

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

VMD: visual molecular dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

The structure of copper-nitrite reductase from Achromobacter cycloclastes at five pH values, with NO2- bound and with type II copper depleted

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Fast 3D motif search of EM density maps using a locally normalized cross-correlation function

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Docking structures of domains into maps from cryo-electron microscopy using local correlation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Flexible protein-protein docking based on Best-First search algorithm.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Multiple subunit fitting into a low-resolution density map of a macromolecular complex using a gaussian mixture model.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Multi-resolution anchor-point registration of biomolecular assemblies and their components.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Crystal structures of Escherichia coli RecA in complex with MgADP and MnAMP-PNP.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Interactive fitting augmented by force-feedback and virtual reality.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Quantitative fitting of atomic models into observed densities derived by electron microscopy.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron Tomography

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

Multi-resolution contour-based fitting of macromolecular structures

14 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3352678

A 11.5 A single particle reconstruction of GroEL using EMAN

14 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21078392

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Modeling Tricks and Fitting Techniques for Multiresolution Structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21078392

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JSB.2010.11.002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21078392%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21078392%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference