Spontaneous conformational changes in the E. coli GroEL subunit from all-atom molecular dynamics simulations (Q35963381)

11 August 2017

Spontaneous conformational changes in the E. coli GroEL subunit from all-atom molecular dynamics simulations (English)

1 reference

11 August 2017

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Yelena Sliozberg

1

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11 August 2017

Cameron F Abrams

series ordinal

2

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11 August 2017

language of work or name

English

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publication date

18 May 2007

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11 August 2017

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11 August 2017

93

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11 August 2017

6

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11 August 2017

1906-1916

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Dynamics of allosteric transitions in GroEL.

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

GroEL-GroES-mediated protein folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Allosteric signaling of ATP hydrolysis in GroEL-GroES complexes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Crystal structure of wild-type chaperonin GroEL.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Conversion of the allosteric transition of GroEL from concerted to sequential by the single mutation Asp-155 -> Ala.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Structural basis for GroEL-assisted protein folding from the crystal structure of (GroEL-KMgATP)14 at 2.0A resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

ATP-bound states of GroEL captured by cryo-electron microscopy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

A dynamic model for the allosteric mechanism of GroEL

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

The allosteric mechanism of the chaperonin GroEL: a dynamic analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

The crystal structure of the asymmetric GroEL–GroES–(ADP)7 chaperonin complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Putting a lid on protein folding: structure and function of the co-chaperonin, GroES.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Knowledge-based protein secondary structure assignment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

VMD: visual molecular dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Residues in chaperonin GroEL required for polypeptide binding and release

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

The crystal structure of the bacterial chaperonin GroEL at 2.8 A

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Purification and properties of groE, a host protein involved in bacteriophage assembly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Isolation and characterization of the host protein groE involved in bacteriophage lambda assembly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Positive cooperativity in the functioning of molecular chaperone GroEL

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Nucleotide binding to the chaperonin GroEL: non-cooperative binding of ATP analogs and ADP, and cooperative effect of ATP.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

A kinetic analysis of the nucleotide-induced allosteric transitions of GroEL.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Inter-ring communication is disrupted in the GroEL mutant Arg13 --> Gly; Ala126 --> Val with known crystal structure.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Two lines of allosteric communication in the oligomeric chaperonin GroEL are revealed by the single mutation Arg196-->Ala.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Nested cooperativity in the ATPase activity of the oligomeric chaperonin GroEL.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1959553

Cooperativity in ATP hydrolysis by GroEL is increased by GroES

24 September 2018

1 reference

12 December 2020

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

12 December 2020

The crystal structure of the GroES co-chaperonin at 2.8 Å resolution

1 reference

12 December 2020

The 2.4 A crystal structure of the bacterial chaperonin GroEL complexed with ATP gamma S

1 reference

12 December 2020

Structural basis of allosteric changes in the GroEL mutant Arg197→Ala

1 reference

12 December 2020

Structure and function in GroEL-mediated protein folding

1 reference

12 December 2020

10.1529/BIOPHYSJ.107.108043

Identifiers

DOI

1 reference

release_3ngbixyvk5eqzl3mtp7evfdr4u

11 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3ngbixyvk5eqzl3mtp7evfdr4u

24 November 2022

mapped directly with Wikidata item

1 reference

11 August 2017

PubMed publication ID

17513353

1 reference