An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4. (Q35965155)

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English	An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4.	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4. (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Escherichia coli

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author name string

Wilma Ross

1

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Europe PubMed Central

PMC publication ID

11 August 2017

David A Schneider

2

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Europe PubMed Central

PMC publication ID

11 August 2017

Brian J Paul

3

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Europe PubMed Central

PMC publication ID

11 August 2017

Aaron Mertens

4

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Europe PubMed Central

PMC publication ID

11 August 2017

Richard L Gourse

5

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Europe PubMed Central

PMC publication ID

11 August 2017

publication date

1 May 2003

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Europe PubMed Central

PMC publication ID

11 August 2017

Genes & Development

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Europe PubMed Central

PMC publication ID

11 August 2017

17

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Europe PubMed Central

PMC publication ID

11 August 2017

10

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

1293-1307

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

1 reference

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The bacteriophage T4 transcription activator MotA interacts with the far-C-terminal region of the sigma70 subunit of Escherichia coli RNA polymerase

1 reference

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Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

1 reference

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2 October 2017

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

1 reference

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2 October 2017

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

1 reference

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2 October 2017

Structure of the bacterial RNA polymerase promoter specificity sigma subunit

1 reference

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2 October 2017

Determinants of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit important for transcription at class I cyclic AMP receptor protein-dependent promoters

1 reference

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Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters

1 reference

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Fine structure of E. coli RNA polymerase-promoter interactions: alpha subunit binding to the UP element minor groove

1 reference

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2 October 2017

Interaction of the C-terminal domain of the E. coli RNA polymerase alpha subunit with the UP element: recognizing the backbone structure in the minor groove surface

1 reference

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2 October 2017

Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro

1 reference

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UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition

1 reference

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Common fold in helix-hairpin-helix proteins

1 reference

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Interactions between activating region 3 of the Escherichia coli cyclic AMP receptor protein and region 4 of the RNA polymerase sigma(70) subunit: application of suppression genetics.

1 reference

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The structure and the characteristic DNA binding property of the C-terminal domain of the RNA polymerase alpha subunit from Thermus thermophilus

1 reference

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DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study

1 reference

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2 October 2017

Transcription activation by catabolite activator protein (CAP)

1 reference

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Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

1 reference

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The functional and regulatory roles of sigma factors in transcription

1 reference

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2 October 2017

The Escherichia coli Ada protein can interact with two distinct determinants in the sigma70 subunit of RNA polymerase according to promoter architecture: identification of the target of Ada activation at the alkA promoter

1 reference

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Escherichia coli promoters with UP elements of different strengths: modular structure of bacterial promoters.

1 reference

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Identification of an UP element consensus sequence for bacterial promoters

1 reference

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Transcription activation at Class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase alpha subunit.

1 reference

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2 October 2017

Amino acid residues in the alpha-subunit C-terminal domain of Escherichia coli RNA polymerase involved in activation of transcription from the mtr promoter

1 reference

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Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

1 reference

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Molecular systematic studies of eubacteria, using sigma70-type sigma factors of group 1 and group 2.

1 reference

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Transcription activation at class II CAP-dependent promoters: two interactions between CAP and RNA polymerase

1 reference

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The glutamic acid residue at amino acid 261 of the alpha subunit is a determinant of the intrinsic efficiency of RNA polymerase at the metE core promoter in Escherichia coli

1 reference

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Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element

1 reference

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Escherichia coli RNA polymerase holoenzyme: rapid reconstitution from recombinant alpha, beta, beta', and sigma subunits

1 reference

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A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

1 reference

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2 October 2017

Two modes of transcription initiation in vitro at the rrnB P1 promoter of Escherichia coli

1 reference

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2 October 2017

Amino acid substitutions in the -35 recognition motif of sigma 70 that result in defects in phage lambda repressor-stimulated transcription

1 reference

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2 October 2017

Factor independent activation of rrnB P1. An "extended" promoter with an upstream element that dramatically increases promoter strength

1 reference

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Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.

1 reference

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A mutation in the rpoA gene encoding the alpha subunit of RNA polymerase that affects metE-metR transcription in Escherichia coli

1 reference

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Solution structure of the activator contact domain of the RNA polymerase alpha subunit

1 reference

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2 October 2017

Rate-limiting steps in RNA chain initiation

1 reference

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Visualization and quantitative analysis of complex formation between E. coli RNA polymerase and an rRNA promoter in vitro

1 reference

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One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution

1 reference

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Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variants

1 reference

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2 October 2017

E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

2 October 2017

Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

1 reference

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Promoter recognition by Escherichia coli RNA polymerase: effects of the UP element on open complex formation and promoter clearance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=196054

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Identification of a contact site for different transcription activators in region 4 of the Escherichia coli RNA polymerase sigma70 subunit

1 reference

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Protein-protein contacts that activate and repress prokaryotic transcription

1 reference

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Flexible linker in the RNA polymerase alpha subunit facilitates the independent motion of the C-terminal activator contact domain.

1 reference

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HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site

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Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter

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Factor-independent activation of Escherichia coli rRNA transcription. II. characterization of complexes of rrnB P1 promoters containing or lacking the upstream activator region with Escherichia coli RNA polymerase

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11 July 2018

The C-terminal domains of the RNA polymerase alpha subunits: contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter.

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24 September 2018

Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria.

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24 September 2018

Target of the transcriptional activation function of phage lambda cI protein

1 reference

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24 September 2018

Location, structure, and function of the target of a transcriptional activator protein.

1 reference

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24 September 2018

Mutational analysis of the role of the first helix of region 4.2 of the σ70 subunit ofEscherichia coli RNA polymerase in transcriptional activation by activator protein PhoB

1 reference

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24 September 2018

Protein-protein and protein-DNA interactions of sigma70 region 4 involved in transcription activation by lambdacI

1 reference

https://pubmed.ncbi.nlm.nih.gov/12756230

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA-binding determinants of the alpha subunit of RNA polymerase: novel DNA-binding domain architecture

1 reference

https://pubmed.ncbi.nlm.nih.gov/12756230

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase is required for efficient rho-dependent transcription termination

1 reference

https://pubmed.ncbi.nlm.nih.gov/12756230

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GAD.1079403

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

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