Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the GGC and TAT Triplets (Q35968626)

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English	Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the GGC and TAT Triplets	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the G*GC and T*AT Triplets (English)

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Europe PubMed Central

PMC publication ID

11 August 2017

author name string

Gunaseelan Goldsmith

1

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Thenmalarchelvi Rathinavelan

2

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Europe PubMed Central

PMC publication ID

11 August 2017

Narayanarao Yathindra

3

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Europe PubMed Central

PMC publication ID

11 August 2017

language of work or name

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publication date

24 March 2016

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Europe PubMed Central

PMC publication ID

11 August 2017

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

11

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

e0152102

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

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Creative Commons Attribution 4.0 International

24 March 2016

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April 2022 Public Data File from Crossref

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A triple helix within a pseudoknot is a conserved and essential element of telomerase RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

11 July 2018

Calorimetric analysis of triple helices targeted to the d(G3A4G3).d(C3T4C3) duplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

11 July 2018

Triplex DNA in the nucleus: direct binding of triplex-specific antibodies and their effect on transcription, replication and cell growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

11 July 2018

Structures for the polynucleotide complexes poly(dA) with poly (dT) and poly(dT) with poly(dA) with poly (dT).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

11 July 2018

Structure and stability of X.G.C mismatches in the third strand of intramolecular triplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

11 July 2018

Proton nuclear magnetic resonance assignments and structural characterization of an intramolecular DNA triplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

11 July 2018

Triplex DNA logic gate based upon switching on/off their structure by Ag(+)/cysteine.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Triplex-mediated analysis of cytosine methylation at CpA sites in DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Assembly of liposomes controlled by triple helix formation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Time-resolved fluorescent detection of Hg2+ in a complex environment by conjugating magnetic nanoparticles with a triple-helix molecular switch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Gold nanoparticle-based colorimetric assay of single-nucleotide polymorphism of triplex DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Human initiation protein Orc4 prefers triple stranded DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Triplex molecular beacons as modular probes for DNA detection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Molecular dynamics structures of peptide nucleic acid x DNA hybrid in the wild-type and mutated alleles of Ki-ras proto-oncogene--stereochemical rationale for the low affinity of PNA in the presence of an AC mismatch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Converging free energy estimates: MM-PB(GB)SA studies on the protein-protein complex Ras-Raf.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Molecular dynamics simulation study of DNA triplex formed by mixed sequences in solution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Inhibitory effects of expanded GAA.TTC triplet repeats from intron I of the Friedreich ataxia gene on transcription and replication in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

Symmetry and molecular structure of a DNA triple helix: d(T)n.d(A)n.d(T)n.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4807104

24 September 2018

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0152102

21 January 2018

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0152102

21 January 2018

Programmable pH-triggered DNA nanoswitches

1 reference

https://pubmed.ncbi.nlm.nih.gov/27010368

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanical Model of DNA Allostery

1 reference

https://pubmed.ncbi.nlm.nih.gov/27010368

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spectroscopic and calorimetric studies on the binding of an indoloquinoline drug to parallel and antiparallel DNA triplexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/27010368

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure, Recognition Properties, and Flexibility of the DNA·RNA Hybrid

1 reference

https://pubmed.ncbi.nlm.nih.gov/27010368

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The contribution of cytosine protonation to the stability of parallel DNA triple helices

1 reference

https://pubmed.ncbi.nlm.nih.gov/27010368

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The GAGA factor of Drosophila binds triple-stranded DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/27010368

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics investigations of DNA triple helical models: unique features of the Watson-Crick duplex

1 reference

https://pubmed.ncbi.nlm.nih.gov/27010368

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extension of the range of recognition sequences for triple helix formation by oligonucleotides containing guanines and thymines

1 reference

https://pubmed.ncbi.nlm.nih.gov/27010368

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear magnetic resonance structural studies of intramolecular purine.purine.pyrimidine DNA triplexes in solution. Base triple pairing alignments and strand direction

1 reference

https://pubmed.ncbi.nlm.nih.gov/27010368

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0152102

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

2016PLoSO..1152102G

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

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