Dissociation of halted T7 RNA polymerase elongation complexes proceeds via a forward-translocation mechanism (Q35973258)

11 August 2017

Dissociation of halted T7 RNA polymerase elongation complexes proceeds via a forward-translocation mechanism (English)

1 reference

11 August 2017

Yi Zhou

1

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11 August 2017

Deanna M Navaroli

series ordinal

2

1 reference

11 August 2017

Metewo Selase Enuameh

series ordinal

3

1 reference

11 August 2017

Craig T Martin

series ordinal

4

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11 August 2017

language of work or name

English

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publication date

6 June 2007

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Proceedings of the National Academy of Sciences of the United States of America

11 August 2017

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11 August 2017

104

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11 August 2017

25

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11 August 2017

10352-10357

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Role of DNA bubble rewinding in enzymatic transcription termination

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Thermodynamic and kinetic modeling of transcriptional pausing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

The thermodynamics of DNA structural motifs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Fluorescence characterization of the transcription bubble in elongation complexes of T7 RNA polymerase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Pre-steady-state kinetics of initiation of transcription by T7 RNA polymerase: a new kinetic model

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Thermodynamic parameters for DNA sequences with dangling ends

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Interaction of a nascent RNA structure with RNA polymerase is required for hairpin-dependent transcriptional pausing but not for transcript release

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Information processing by RNA polymerase: recognition of regulatory signals during RNA chain elongation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Identification of specific contacts in T3 RNA polymerase-promoter interactions: kinetic analysis using small synthetic promoters

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Sequence-resolved detection of pausing by single RNA polymerase molecules.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Basic mechanisms of transcript elongation and its regulation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Pausing of RNA polymerase during in vitro transcription of the tryptophan operon leader region

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Transcription pausing by Escherichia coli RNA polymerase is modulated by downstream DNA sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1965517

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

11 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606306104

Forward translocation is the natural pathway of RNA release at an intrinsic terminator

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606306104

Fluorescence methods for studying the kinetics and thermodynamics of transcription initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606306104

Observed instability of T7 RNA polymerase elongation complexes can be dominated by collision-induced "bumping".

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606306104

Characterization of halted T7 RNA polymerase elongation complexes reveals multiple factors that contribute to stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0606306104

T7 RNA polymerase elongation complex structure and movement

21 January 2018

1 reference

12 December 2020

Role of the Non-template Strand of the Elongation Bubble in Intrinsic Transcription Termination

1 reference

12 December 2020

The elongation-termination decision in transcription

1 reference

12 December 2020

Template strand switching by T7 RNA polymerase

1 reference

12 December 2020

Mechanism of intrinsic transcription termination and antitermination

1 reference

12 December 2020

The stability of abortively cycling T7 RNA polymerase complexes depends upon template conformation

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0606306104

1 reference

11 August 2017

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1 reference

11 August 2017

PubMed publication ID

17553968

1 reference