Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity (Q36002388)

11 August 2017

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity (English)

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11 August 2017

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1 reference

31

Cisca Wijmenga

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Sara Vieira-Silva

10

Sara Vieira-Silva

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Alexander Kurilshchikov

Alexander Kurilshikov

2

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Patrick Deelen

Patrick Deelen

17

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Marc Jan Bonder

Marc Jan Bonder

3

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María Carmen Cenit

Maria Carmen Cenit

16

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Lude Franke

Lude Franke

25

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Yurii S. Aulchenko

Yurii S Aulchenko

26

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Arnau Vich Vila

Arnau Vich Vila

8

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Melanie Schirmer

Melanie Schirmer

5

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Soesma A Jankipersadsing

Soesma A Jankipersadsing

14

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Tommi Vatanen

Tommi Vatanen

6

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Jingyuan Fu

Jingyuan Fu

32

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Marie Joossens

Marie Joossens

15

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Jeroen Raes

Jeroen Raes

28

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Jun Wang

11

Jun Wang

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11 August 2017

27

Curtis Huttenhower

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11 August 2017

18

Morris A Swertz

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11 August 2017

23

Dirk Gevers

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11 August 2017

22

Mihai G Netea

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11 August 2017

20

Rinse K Weersma

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11 August 2017

24

Daisy Jonkers

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11 August 2017

30

Ramnik J Xavier

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11 August 2017

Gwen Falony

9

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ORCID Public Data File 2021

Floris Imhann

12

Floris Imhann

1 reference

11 August 2017

7

Zlatan Mujagic

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11 August 2017

4

Ettje F Tigchelaar

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11 August 2017

1

Alexandra Zhernakova

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11 August 2017

21

Edith J M Feskens

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11 August 2017

Eelke Brandsma

13

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11 August 2017

LifeLines cohort study

19

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11 August 2017

Marten H Hofker

29

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11 August 2017

language of work or name

English

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publication date

28 April 2016

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11 August 2017

5

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inferred from page(s)

published in

Science

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11 August 2017

352

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11 August 2017

565-569

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11 August 2017

6285

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Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

The microbiome quality control project: baseline study design and future directions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Cohort profile: LifeLines DEEP, a prospective, general population cohort study in the northern Netherlands: study design and baseline characteristics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

In vitro colonic metabolism of coffee and chlorogenic acid results in selective changes in human faecal microbiota growth.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Addition of a Gastrointestinal Microbiome Modulator to Metformin Improves Metformin Tolerance and Fasting Glucose Levels

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Interaction of dietary compounds, especially polyphenols, with the intestinal microbiota: a review.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Gene Ontology Consortium: going forward

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Human genetics shape the gut microbiome.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

UniProt: a hub for protein information

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

A transgenic probiotic secreting a parasite immunomodulator for site-directed treatment of gut inflammation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Waste not, want not: why rarefying microbiome data is inadmissible

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Trimmomatic: a flexible trimmer for Illumina sequence data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Richness of human gut microbiome correlates with metabolic markers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Metformin retards aging in C. elegans by altering microbial folate and methionine metabolism.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Structure, function and diversity of the healthy human microbiome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Metagenomic microbial community profiling using unique clade-specific marker genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

The impact of the gut microbiota on human health: an integrative view

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Fast gapped-read alignment with Bowtie 2

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Altered levels of fecal chromogranins and secretogranins in IBS: relevance for pathophysiology and symptoms?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

The UniProt-GO Annotation database in 2011.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Linking long-term dietary patterns with gut microbial enterotypes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

The extended granin family: structure, function, and biomedical implications

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Search and clustering orders of magnitude faster than BLAST

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

QIIME allows analysis of high-throughput community sequencing data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Citrulline as a biomarker of intestinal failure due to enterocyte mass reduction.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Evaluation of psychosomatic stress in children by measuring salivary chromogranin A.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

High prevalence of NSAID enteropathy as shown by a simple faecal test

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

A peptide antibiotic from human skin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Isolation of Methanobrevibacter smithii from human feces

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Siblings of patients with Crohn's disease exhibit a biologically relevant dysbiosis in mucosal microbial metacommunities

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Cohort Profile: LifeLines, a three-generation cohort study and biobank

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Synergistic effects of NOD1 or NOD2 and TLR4 activation on mouse sickness behavior in relation to immune and brain activity markers.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Study of common bile duct exploration and endoscopic sphincterotomy in a consecutive series of 438 patients.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Real time ultrasonography in the evaluation of hydrocephalus and associated abnormalities.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Increased fecal levels of chromogranin A, chromogranin B, and secretoneurin in collagenous colitis.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Chromogranin A-derived peptides are involved in innate immunity

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Influence of red wine polyphenols and ethanol on the gut microbiota ecology and biochemical biomarkers.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Elevated human beta-defensin-2 levels indicate an activation of the innate immune system in patients with irritable bowel syndrome

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Proton pump inhibitors are associated with elevation of faecal calprotectin and may affect specificity

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5240844

Population-level analysis of gut microbiome variation

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD3369

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD3369

Plasma chromogranin a in patients with inflammatory bowel disease

21 January 2018

1 reference

12 December 2020

Elevated serum chromogranin A in irritable bowel syndrome (IBS) and inflammatory bowel disease (IBD): a shared model for pathogenesis?

1 reference

12 December 2020

Chromogranin A as a possible tool in the diagnosis of irritable bowel syndrome

1 reference

12 December 2020

Source and fate of circulating citrulline

1 reference

12 December 2020

Identifiers

DOI

10.1126/SCIENCE.AAD3369

1 reference

11 August 2017

1 reference

11 August 2017

1 reference