Ribonucleoprotein-masked nicks at 50-kbp intervals in the eukaryotic genomic DNA. (Q36002520)

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7 January 2020

title

Ribonucleoprotein-masked nicks at 50-kbp intervals in the eukaryotic genomic DNA (English)

1 reference

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ribonucleoprotein complex

7 January 2020

main subject

1 reference

3

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7 January 2020

Zsolt Bacsó

7

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7 January 2020

Laszlo Nagy

12

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7 January 2020

author name string

Lóránt Székvölgyi

1

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7 January 2020

Zsuzsa Rákosy

2

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7 January 2020

Endre Kókai

4

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7 January 2020

László Imre

5

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7 January 2020

György Vereb

6

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7 January 2020

Katalin Goda

8

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7 January 2020

Sándor Varga

9

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7 January 2020

Margit Balázs

10

1 reference

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7 January 2020

Viktor Dombrádi

11

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7 January 2020

Gábor Szabó

13

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7 January 2020

language of work or name

English

0 references

publication date

11 September 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17848525%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

7 January 2020

published in

1 reference

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7 January 2020

volume

104

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7 January 2020

issue

38

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7 January 2020

page(s)

14964-14969

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Nuclear transcription is essential for specification of mammalian replication origins

7 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription.

2 October 2017

1 reference

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An antibody-based microarray assay for small RNA detection

2 October 2017

1 reference

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Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

An intranuclear frame for chromatin compartmentalization and higher-order folding.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Unraveling the organization of the internal nuclear matrix: RNA-dependent anchoring of NuMA to a lamin scaffold

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Regulating the mammalian genome: the role of nuclear architecture

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Distinctive higher-order chromatin structure at mammalian centromeres

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Experimental observations of a nuclear matrix

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

The DNA of annexin V-binding apoptotic cells is highly fragmented.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

DNA cleavage within the MLL breakpoint cluster region is a specific event which occurs as part of higher-order chromatin fragmentation during the initial stages of apoptosis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

ML-1 cell line lacks a germline MLL locus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Apoptotic death in epithelial cells: cleavage of DNA to 300 and/or 50 kb fragments prior to or in the absence of internucleosomal fragmentation.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Different topoisomerase II antitumor drugs direct similar specific long-range fragmentation of an amplified c-MYC gene locus in living cells and in high-salt-extracted nuclei.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

The nonchromatin substructures of the nucleus: the ribonucleoprotein (RNP)-containing and RNP-depleted matrices analyzed by sequential fractionation and resinless section electron microscopy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

The size of chromatin loops in HeLa cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Chemical and enzymatic analysis of covalent bonds between peptides and chromosomal DNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Heterogeneous nuclear RNA-protein fibers in chromatin-depleted nuclei

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Functional interactions of DNA topoisomerases with a human replication origin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Evidence for non-deoxynucleotide linkers in Ehrlich ascites tumour cell DNA

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Histone-H1-dependent chromatin superstructures and the suppression of gene activity.

11 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0702269104

Supercoiled loops and eucaryotic DNA replicaton

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0702269104

Coordination of replication and transcription along a Drosophila chromosome.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0702269104

Chromatin isolated from viable human PBLs contains DNA fragmented to >/=50 kb.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Site-specific DNA cleavage within the MLL breakpoint cluster region induced by topoisomerase II inhibitors.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Size of native and denatured DNA of Ehrlich ascites tumour cells isolated in the presence of different protease concentrations.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1986596

Fragmentation of 'nuclear matrix' on a mica target

23 September 2018

1 reference

12 December 2020

Long-range fragmentation of the eukaryotic genome by exogenous and endogenous nucleases proceeds in a specific fashion via preferential DNA cleavage at matrix attachment sites

1 reference

12 December 2020

Internucleotide protein linkers in Ehrlich ascites cell DNA

1 reference

12 December 2020

Protease inducible alkali lability of DNA from proliferating and non-proliferating cells

1 reference

12 December 2020

An in vivo topoisomerase II cleavage site and a DNase I hypersensitive site colocalize near exon 9 in the MLL breakpoint cluster region

1 reference

12 December 2020

Nick-forming sequences may be involved in the organization of eukaryotic chromatin into approximately 50 kbp loops

1 reference

12 December 2020

50-kb chromatin fragmentation in the absence of apoptosis

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0702269104

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17848525%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

0 references

1 reference

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7 January 2020

PubMed publication ID

17848525

1 reference