Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics (Q36011156)

11 August 2017

Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics (English)

1 reference

11 August 2017

1 reference

Joshua N Adkins

3

0 references

Richard D. Smith

object named as

Richard D Smith

7

0 references

Stephen J Callister

1

object named as

Stephen J Callister

1 reference

11 August 2017

8

Mary S Lipton

1 reference

11 August 2017

5

Wei-Jun Qian

1 reference

11 August 2017

Richard C Barry

2

1 reference

11 August 2017

Ethan T Johnson

4

1 reference

11 August 2017

Bobbie-Jo M Webb-Robertson

6

1 reference

11 August 2017

1 February 2006

1 reference

Journal of Proteome Research

11 August 2017

1 reference

11 August 2017

5

1 reference

11 August 2017

2

1 reference

11 August 2017

277-286

1 reference

Normalization regarding non-random missing values in high-throughput mass spectrometry data.

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Targeted comparative proteomics by liquid chromatography-tandem Fourier ion cyclotron resonance mass spectrometry.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Charge competition and the linear dynamic range of detection in electrospray ionization mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Ultrasensitive and quantitative analyses from combined separations-mass spectrometry for the characterization of proteomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

An automated high performance capillary liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometer for high-throughput proteomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Normalization of cDNA microarray data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Evaluation of normalization methods for microarray data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Quantitative quality control in microarray experiments and the application in data filtering, normalization and false positive rate prediction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Proteomic tools for quantitation by mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Microarray data normalization and transformation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Housekeeping genes as internal standards: use and limits

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Recovery of striatal dopamine function after acute amphetamine- and methamphetamine-induced neurotoxicity in the vervet monkey

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Integration of electrokinetic-based multidimensional separation/concentration platform with electrospray ionization-Fourier transform ion cyclotron resonance-mass spectrometry for proteome analysis of Shewanella oneidensis.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Non-linear normalization and background correction in one-channel cDNA microarray studies

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Acid-labile isotope-coded extractants: a class of reagents for quantitative mass spectrometric analysis of complex protein mixtures

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1992440

Investigating the use of an octupole ion guide for ion storage and high-pass mass filtering to improve the quantitative performance of electrospray ion trap mass spectrometry

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16457593

12 December 2020

inferred from PubMed ID database lookup

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16457593

12 December 2020

inferred from PubMed ID database lookup

Local mean normalization of microarray element signal intensities across an array surface: quality control and correction of spatially systematic artifacts

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16457593

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1021/PR050300L

1 reference

release_padhrpsjwve5vlnsntmxldihca

11 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/padhrpsjwve5vlnsntmxldihca

24 November 2022

mapped directly with Wikidata item

1 reference

11 August 2017

PubMed publication ID

16457593

1 reference