Recognition of a human arrest site is conserved between RNA polymerase II and prokaryotic RNA polymerases (Q36021385)

11 August 2017

Recognition of a human arrest site is conserved between RNA polymerase II and prokaryotic RNA polymerases (English)

1 reference

11 August 2017

J Mote

1

1 reference

11 August 2017

D Reines

series ordinal

2

1 reference

11 August 2017

language of work or name

English

0 references

publication date

1 July 1998

1 reference

Journal of Biological Chemistry

11 August 2017

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11 August 2017

273

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11 August 2017

27

1 reference

11 August 2017

16843-16852

1 reference

Preferential interaction of the his pause RNA hairpin with RNA polymerase beta subunit residues 904-950 correlates with strong transcriptional pausing

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

RNA polymerase slides home: pause and termination site recognition

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Nuclease activity of T7 RNA polymerase and the heterogeneity of transcription elongation complexes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

A model for the mechanism of polymerase translocation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

A novel RNA polymerase I-dependent RNase activity that shortens nascent transcripts from the 3' end.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Intrinsic termination of T7 RNA polymerase mediated by either RNA or DNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

The RNA polymerase II general elongation factors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Elongation factor TFIIS contains three structural domains: solution structure of domain II

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Purification of RNA polymerase II general transcription factors from rat liver.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Increased accommodation of nascent RNA in a product site on RNA polymerase II during arrest

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

The shrewd grasp of RNA polymerase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Mutations in the second largest subunit of RNA polymerase II cause 6-azauracil sensitivity in yeast and increased transcriptional arrest in vitro

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Variation in the size of nascent RNA cleavage products as a function of transcript length and elongation competence

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Functional analysis of a stable transcription arrest site in the first intron of the murine adenosine deaminase gene

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Identification of a 3'-->5' exonuclease activity associated with human RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Purified yeast RNA polymerase II reads through intrinsic blocks to elongation in response to the yeast TFIIS analogue, P37.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Discontinuous mechanism of transcription elongation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Sliding clamps of DNA polymerases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: "jumping" of RNA polymerase and asymmetric expansion and contraction of the "transcription bubble".

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Crystal structure of the GreA transcript cleavage factor from Escherichia coli

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Identification of a decay in transcription potential that results in elongation factor dependence of RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Crystal structure of bacteriophage T7 RNA polymerase at 3.3 A resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Structure of a new nucleic-acid-binding motif in eukaryotic transcriptional elongation factor TFIIS

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Intrinsic transcript cleavage activity of RNA polymerase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Nascent RNA cleavage by arrested RNA polymerase II does not require upstream translocation of the elongation complex on DNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Synthetic sites for transcription termination and a functional comparison with tryptophan operon termination sites in vitro

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Antibodies to RNA from autoimmune NZB/NZW mice recognize a similar antigenic determinant and show a large idiotypic diversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Transcription elongation factor SII (TFIIS) enables RNA polymerase II to elongate through a block to transcription in a human gene in vitro

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

RNA polymerase B (II) and general transcription factors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Analysis of the signals for transcription termination by purified RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Role of the mammalian transcription factors IIF, IIS, and IIX during elongation by RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Termination efficiency at rho-dependent terminators depends on kinetic coupling between RNA polymerase and rho

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Spontaneous cleavage of RNA in ternary complexes of Escherichia coli RNA polymerase and its significance for the mechanism of transcription

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

RNA polymerase II elongation complex. Elongation complexes purified using an anti-RNA antibody do not contain initiation factor alpha

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Cloning, expression and characterization of the human transcription elongation factor, TFIIS

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

RNA chain elongation by Escherichia coli RNA polymerase. Factors affecting the stability of elongating ternary complexes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

RNA polymerase II initiation factor alpha from rat liver is almost identical to human TFIIB.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Elongation factor-dependent transcript shortening by template-engaged RNA polymerase II.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

New models for the mechanism of transcription elongation and its regulation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

A simple procedure for resolution of Escherichia coli RNA polymerase holoenzyme from core polymerase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

A quantitative assay for bacterial RNA polymerases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Basic mechanisms of transcript elongation and its regulation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Domain organization of Escherichia coli transcript cleavage factors GreA and GreB.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Termination-altering amino acid substitutions in the beta' subunit of Escherichia coli RNA polymerase identify regions involved in RNA chain elongation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Complexes of yeast RNA polymerase II and RNA are substrates for TFIIS-induced RNA cleavage

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

A model for transcription termination suggested by studies on the trp attenuator in vitro using base analogs.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Characterization of T7-specific ribonucleic acid polymerase. IV. Resolution of the major in vitro transcripts by gel electrophoresis.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Identification of intrinsic termination sites in vitro for RNA polymerase II within eukaryotic gene sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Factor-dependent transcription termination by vaccinia virus RNA polymerase. Evidence that the cis-acting termination signal is in nascent RNA.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

RpoB8, a rifampicin-resistant termination-proficient RNA polymerase, has an increased Km for purine nucleotides during transcription elongation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Discrete functional stages of vaccinia virus early transcription during a single round of RNA synthesis in vitro

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Transcript cleavage factors from E. coli.

11 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Coupling between transcription termination and RNA polymerase inchworming.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Amino acid substitutions in the two largest subunits of Escherichia coli RNA polymerase that suppress a defective Rho termination factor affect different parts of the transcription complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Three-dimensional structure of E. coli core RNA polymerase: promoter binding and elongation conformations of the enzyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Two conformations of RNA polymerase II revealed by electron crystallography.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Mutant bacteriophage T7 RNA polymerases with altered termination properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Transcription termination by vaccinia RNA polymerase entails recognition of specific phosphates in the nascent RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Transcript cleavage in an RNA polymerase I elongation complex. Evidence for a dissociable activity similar to but distinct from TFIIS.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Mechanism of DmS-II-mediated pause suppression by Drosophila RNA polymerase II.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Hydrolytic cleavage of nascent RNA in RNA polymerase III ternary transcription complexes.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3371603

Translocation and transcriptional arrest during transcript elongation by RNA polymerase II

23 September 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

TFIIS binds to mouse RNA polymerase I and stimulates transcript elongation and hydrolytic cleavage of nascent rRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Substrate specificity of the RNase activity of yeast RNA polymerase III

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

In vivo transcription from deletion mutations introduced near Escherichia coli ribosomal RNA promoter P2

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Helix-random coil transitions in synthetic DNAs of alternating sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Characterization of two types of termination signal for bacteriophage T7 RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Termination and slippage by bacteriophage T7 RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Factor-dependent release of nascent RNA by ternary complexes of vaccinia RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.27.16843

Factor-stimulated RNA polymerase II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates

21 January 2018

1 reference

12 December 2020

Nascent RNA cleavage by purified ternary complexes of vaccinia RNA polymerase

1 reference

12 December 2020

Drosophila RNA polymerase II mutants that affect transcription elongation

1 reference

12 December 2020

Studies of in vitro transcription by calf thymus RNA polymerase II using a novel duplex DNA template

1 reference

12 December 2020

Factors involved in specific transcription by mammalian RNA polymerase II. Transcription factor IIS stimulates elongation of RNA chains

1 reference

12 December 2020

Mechanistic studies of transcription arrest at the adenovirus major late attenuation site. Comparison of purified RNA polymerase II and washed elongation complexes

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.273.27.16843

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

9642244

1 reference