Primordial soup or vinaigrette: did the RNA world evolve at acidic pH? (Q36025633)

11 August 2017

Primordial soup or vinaigrette: did the RNA world evolve at acidic pH? (English)

1 reference

11 August 2017

Warren P Tate

2

0 references

author name string

Harold S Bernhardt

series ordinal

1

1 reference

11 August 2017

20 January 2012

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11 August 2017

1 reference

11 August 2017

7

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11 August 2017

4

1 reference

Serpentinite and the dawn of life

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Pumice as a remarkable substrate for the origin of life

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Single-molecule paleoenzymology probes the chemistry of resurrected enzymes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

The Hadean-Archaean environment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Primitive genetic polymers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

The transition from noncoded to coded protein synthesis: did coding mRNAs arise from stability-enhancing binding partners to tRNA?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Multiple translational products from a five-nucleotide ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Microbial habitability of the Hadean Earth during the late heavy bombardment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Rapid and simple ribozymic aminoacylation using three conserved nucleotides

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Evidence from glycine transfer RNA of a frozen accident at the dawn of the genetic code

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Parallel adaptations to high temperatures in the Archaean eon.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Hydrothermal vents and the origin of life

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

TRPC channel activation by extracellular thioredoxin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

On the origin of biochemistry at an alkaline hydrothermal vent

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

The cellular machinery of Ferroplasma acidiphilum is iron-protein-dominated.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

The UCSC Archaeal Genome Browser

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

In vitro evolution and characterization of a ligase ribozyme adapted to acidic conditions: effect of further rounds of evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Membrane growth can generate a transmembrane pH gradient in fatty acid vesicles

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Evolution of Tetrahymena ribozyme mutants with increased structural stability

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Protonation of non-Watson-Crick base pairs and encapsidation of turnip yellow mosaic virus RNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

In vitro adaptation of a ligase ribozyme for activity under a low-pH condition

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

The complete genome of the crenarchaeon Sulfolobus solfataricus P2

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Evidence from detrital zircons for the existence of continental crust and oceans on the Earth 4.4 Gyr ago

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Structure of a triple helical DNA with a triplex-duplex junction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Thermodynamics of RNA hairpins containing single internal mismatches

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

In vitro selection of self-cleaving RNAs with a low pH optimum

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Structural features and stability of an RNA triple helix in solution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Basic concepts in RNA virus evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Solution structures of the individual single strands of the fragile X DNA triplets (GCC)n.(GGC)n

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

An operational RNA code for amino acids and possible relationship to genetic code

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Exceptionally stable nucleic acid hairpins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Ethanol production during batch fermentation with Saccharomyces cerevisiae: changes in glycolytic enzymes and internal pH

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Generation of a large, protonophore-sensitive proton motive force and pH difference in the acidophilic bacteria Thermoplasma acidophilum and Bacillus acidocaldarius.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Sequence specificity in triple-helix formation: experimental and theoretical studies of the effect of mismatches on triplex stability

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Origin of life-facing up to the physical setting

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

On the origin of the transfer RNA molecule

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Non-enzymatic transfer of sequence information under plausible prebiotic conditions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

The role of the universally conserved A2450-C2063 base pair in the ribosomal peptidyl transferase center.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

A triple helix within a pseudoknot is a conserved and essential element of telomerase RNA.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Origin and ancestor: separate environments

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

A nonhyperthermophilic common ancestor to extant life forms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Non-enzymatic transcription of an oligodeoxynucleotide 14 residues long

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Low-pH-induced effects on patterns of protein synthesis and on internal pH in Escherichia coli and Salmonella typhimurium

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

The emergence of life from iron monosulphide bubbles at a submarine hydrothermal redox and pH front

11 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

A novel acidophilic RNA motif that recognizes coenzyme A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

RNA-catalyzed amino acid activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

Stability of model membranes in extreme environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

Bioenergetics and cytoplasmic membrane stability of the extremely acidophilic, thermophilic archaeon Picrophilus oshimae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

The 'pH optimum anomaly' of intracellular enzymes of Ferroplasma acidiphilum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

Lipid-assisted synthesis of RNA-like polymers from mononucleotides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

Possible impact of a primordial oil slick on atmospheric and chemical evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

Protein stability and surface electrostatics: a charged relationship.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

Alanine racemase from the acidophile Acetobacter aceti

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

Primordial ocean chemistry and its compatibility with the RNA world

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

Continuous in vitro evolution of ribozymes that operate under conditions of extreme pH

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

21 October 2018

Do proteins predate DNA?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372908

MOLECULAR EVOLUTION:Do Proteins Predate DNA?

21 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-4

Template-directed synthesis on the pentanucleotide CpCpGpCpC

21 January 2018

1 reference

12 December 2020

Kinetics and Mechanisms for the Cleavage and Isomerization of the Phosphodiester Bonds of RNA by Brønsted Acids and Bases

1 reference

12 December 2020

Primeval procreative comet pond

1 reference

12 December 2020

On the chemical reactivity of aminoacyl-tRNA ester bond. I. Influence of pH and nature of the acyl group on the rate of hydrolysis

1 reference

12 December 2020

Studies on anticodon-anticodon interactions: hemi-protonation of cytosines induces self-pairing through the GCC anticodon of E. coli tRNA-Gly

1 reference

12 December 2020

THE MECHANISM OF HYDROLYSIS OF AMINO ACYL RNA

1 reference

12 December 2020

Identifiers

DOI

10.1186/1745-6150-7-4

1 reference

PMC publication ID

3372908

Dimensions Publication ID

11 August 2017

0 references

1 reference

PMC publication ID

3372908

11 August 2017

PubMed publication ID

22264281

1 reference

PMC publication ID

3372908